BtaINT0123473 @ bosTau6
Intron Retention
Gene
ENSBTAG00000017830 | RBMS2
Description
Bos taurus RNA binding motif, single stranded interacting protein 2 (RBMS2), mRNA. [Source:RefSeq mRNA;Acc:NM_001034365]
Coordinates
chr5:57174218-57174514:-
Coord C1 exon
chr5:57174468-57174514
Coord A exon
chr5:57174312-57174467
Coord C2 exon
chr5:57174218-57174311
Length
156 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
GATGTGGTCCCTTCCTACAGGTT
3' ss Score
10.75
Exon sequences
Seq C1 exon
GGTGGCATGGCTTTGACCTATGACCCCTCCACGGCTCTTCAGAATGG
Seq A exon
GTAAGGGTGTCGTATGTAAACAGCCTGCCTGAAAATGCCATAGTCGTGTGTCCAGGCCCTCGCATGGATTGCCTTGATGTTCATGGCTGTATCTGTCAGTGGGGGCCCTTGCTTTGCAGTTTCCTGACTCCTTACTGATGTGGTCCCTTCCTACAG
Seq C2 exon
GTTTTACCCAGCTCCTTACAACCTCGCCCCCAACAGGATGCTCACTCAGTCTGCACTGTCCCCGTATCTTCCATCTCCTATGACGTCATATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017830:ENSBTAT00000023705:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.250 A=NA C2=0.219
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGGCATGGCTTTGACCTAT
R:
TGATATGACGTCATAGGAGATGGA
Band lengths:
140-296
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]