HsaINT1029010 @ hg38
Intron Retention
Gene
ENSG00000076067 | RBMS2
Description
RNA binding motif single stranded interacting protein 2 [Source:HGNC Symbol;Acc:HGNC:9909]
Coordinates
chr12:56581833-56582152:+
Coord C1 exon
chr12:56581833-56581879
Coord A exon
chr12:56581880-56582058
Coord C2 exon
chr12:56582059-56582152
Length
179 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
ATTGAGGTTCCTTCCCACAGGTT
3' ss Score
8.13
Exon sequences
Seq C1 exon
GGCGTCATGGCCTTGACCTATGACCCCACCACAGCTCTTCAGAATGG
Seq A exon
GTAAGGTTTTATATAATCAAGCCACCTGAAAATGATAATGGCCTGTGTCCAGACACTCAAATGATTCATCTTGATTCTCTCTATTTGAAAGTCAAGGGAACGTTGGCTGTGCCTATCAGTTGGGACCCTTCCCTTGTGGTTTCCTGTGACTCAGTACTGATTGAGGTTCCTTCCCACAG
Seq C2 exon
GTTTTACCCAGCCCCCTATAACATCACCCCCAACAGGATGCTTGCTCAGTCTGCACTCTCCCCATACCTTTCCTCTCCTGTGTCTTCGTATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000076067:ENST00000262031:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.031 A=NA C2=0.047
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGTCATGGCCTTGACCTATG
R:
TGATACGAAGACACAGGAGAGGA
Band lengths:
139-318
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains