MmuINT0132952 @ mm10
Intron Retention
Gene
ENSMUSG00000040043 | Rbms2
Description
RNA binding motif, single stranded interacting protein 2 [Source:MGI Symbol;Acc:MGI:1861776]
Coordinates
chr10:128137474-128137707:-
Coord C1 exon
chr10:128137661-128137707
Coord A exon
chr10:128137568-128137660
Coord C2 exon
chr10:128137474-128137567
Length
93 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
AACAAAGGCCTCTCCTGCAGGTT
3' ss Score
6.21
Exon sequences
Seq C1 exon
GGCGGTATGGCCTTGACCTATGACCCCACTGCTGCCCTTCAGAATGG
Seq A exon
GTAAGGGTGTTTCATTCTAATTTTCAAACAGCAGTTAGTGGAGGTGGCTCTGGCTCCCCGAGGCTTCTCACTGAACAAAGGCCTCTCCTGCAG
Seq C2 exon
GTTCTACGCAGCTCCTTACAGTATCGCCCACAGCAGGATGCTTGCTCAATCTGCGCTAGCCCCGTATCTTCCATCTCCTGTGTCTTCCTATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040043:ENSMUST00000099139:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.078 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGGTATGGCCTTGACCTATG
R:
AGGAAGACACAGGAGATGGAAGA
Band lengths:
135-228
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types