HsaINT0139883 @ hg19
Intron Retention
Gene
ENSG00000205517 | RGL3
Description
ral guanine nucleotide dissociation stimulator-like 3 [Source:HGNC Symbol;Acc:30282]
Coordinates
chr19:11512891-11513217:-
Coord C1 exon
chr19:11513131-11513217
Coord A exon
chr19:11512924-11513130
Coord C2 exon
chr19:11512891-11512923
Length
207 bp
Sequences
Splice sites
5' ss Seq
GAGGTCTGA
5' ss Score
2.68
3' ss Seq
CAGACACACTTTGCCCCCAGGGG
3' ss Score
7.29
Exon sequences
Seq C1 exon
AAACCACCCCCAGGCCCTGTCCCCTACCTTGGCACCTTCCTTACGGACCTGGTTATGCTGGACACAGCCCTGCCGGATATGTTGGAG
Seq A exon
GTCTGACCCCTGACCCTTGACCCCTGACCCCAGCTCCACTTGCCCCCAGCACAATGGGCCTCCCAATATCCACCCTTGATCCTACCTGTACTCCTGACACCACCCCACACTCCCTTACTACAGTGGGGCTCCTGACATCCCAGCCCCTGACCTTGACCCTTGACCCTTGACCCTGGGTGCTGCAATTCAGACACACTTTGCCCCCAG
Seq C2 exon
GGGGATCTCATTAACTTTGAGAAGAGGAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000205517-RGL3:NM_001161616:11
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.207 A=NA C2=0.091
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=FE(13.3=100)
A:
NA
C2:
PF0061714=RasGEF=FE(4.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)