BtaINT0124456 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008198 | RGL3
Description
ral guanine nucleotide dissociation stimulator-like 3 [Source:HGNC Symbol;Acc:HGNC:30282]
Coordinates
chr7:17013577-17013892:-
Coord C1 exon
chr7:17013806-17013892
Coord A exon
chr7:17013610-17013805
Coord C2 exon
chr7:17013577-17013609
Length
196 bp
Sequences
Splice sites
5' ss Seq
AAGGTCTGA
5' ss Score
4.3
3' ss Seq
CAGACAAAGTTTGTCCCCAGGGG
3' ss Score
2.37
Exon sequences
Seq C1 exon
AAACTGCCCCCAGGCCCCATCCCCTACCTTGGCACCTTTCTCACGGACCTGGTAATGCTGGATACCGCCCTGCCGGATATGCTGAAG
Seq A exon
GTCTGAGCCCTGACTCTTGACTCCTTACCCTCAGCACAGTGAGCTTCCTGACCTCTCACCCTTGACCTTGCCCGTGCTCCCTGACCCCAGCTCCCTTAGTGCATGGGGTTCCTGATATCCCAGCCCCTGACCTTGATCTTCAACCCCTGACCTTGGAGTCTGAACTGTCTCCAGTTCAGACAAAGTTTGTCCCCAG
Seq C2 exon
GGGGATCTCATCAACTTTGAGAAGAGGAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008198:ENSBTAT00000010783:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.103 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=FE(13.2=100)
A:
NA
C2:
PF0061714=RasGEF=FE(4.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCCCCATCCCCTACCTT
R:
TCTCCTCTTCTCAAAGTTGATGAG
Band lengths:
106-302
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]