BtaEX0030274 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008198 | RGL3
Description
ral guanine nucleotide dissociation stimulator-like 3 [Source:HGNC Symbol;Acc:HGNC:30282]
Coordinates
chr7:17013577-17014053:-
Coord C1 exon
chr7:17014000-17014053
Coord A exon
chr7:17013806-17013892
Coord C2 exon
chr7:17013577-17013609
Length
87 bp
Sequences
Splice sites
3' ss Seq
TGGAGCTCTGGGGGCCACAGAAA
3' ss Score
1.06
5' ss Seq
AAGGTCTGA
5' ss Score
4.3
Exon sequences
Seq C1 exon
GAGGCAACTCAAGGGCCCCAAGAAGGGGATGCCCCCACAGGAAGCCCGTCTTCG
Seq A exon
AAACTGCCCCCAGGCCCCATCCCCTACCTTGGCACCTTTCTCACGGACCTGGTAATGCTGGATACCGCCCTGCCGGATATGCTGAAG
Seq C2 exon
GGGGATCTCATCAACTTTGAGAAGAGGAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008198_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.103 C2=0.000
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=FE(8.0=100)
A:
PF0061714=RasGEF=FE(13.2=100)
C2:
PF0061714=RasGEF=FE(4.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACTCAAGGGCCCCAAGAAG
R:
TCTCCTCTTCTCAAAGTTGATGAG
Band lengths:
80-167
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development