RnoEX0075472 @ rn6
Exon Skipping
Gene
ENSRNOG00000013027 | Rgl3
Description
ral guanine nucleotide dissociation stimulator-like 3 [Source:RGD Symbol;Acc:1309756]
Coordinates
chr8:22988558-22989052:-
Coord C1 exon
chr8:22988996-22989052
Coord A exon
chr8:22988803-22988889
Coord C2 exon
chr8:22988558-22988590
Length
87 bp
Sequences
Splice sites
3' ss Seq
TGAAGCTTTTGGGATTGCAGAAA
3' ss Score
3.1
5' ss Seq
AAGGTTTGA
5' ss Score
5.13
Exon sequences
Seq C1 exon
GAAGAGACCACTGAGGGACCCCAAGGTGATGACTGCTCCCCAGGAAGTCTGCCGTCA
Seq A exon
AAACTGCCCCCAGGTCCTGTCCCCTACCTTGGCACCTTTCTCACAGACTTGGTTATGCTGGATACAGCCTTACCAGATATGTTGAAG
Seq C2 exon
GGAAATCTCATCAACTTTGAAAAGAGGAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013027-'14-15,'14-14,15-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.068 C2=0.000
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=FE(9.0=100)
A:
PF0061714=RasGEF=FE(13.3=100)
C2:
PF0061714=RasGEF=FE(4.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGAGACCACTGAGGGACCC
R:
TCCTCCTCTTTTCAAAGTTGATGAGA
Band lengths:
88-175
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]