GgaEX0006482 @ galGal3
Exon Skipping
Gene
ENSGALG00000004728 | Q5ZIY0_CHICK
Description
NA
Coordinates
chr8:8036657-8039267:+
Coord C1 exon
chr8:8036657-8036746
Coord A exon
chr8:8038380-8038466
Coord C2 exon
chr8:8039235-8039267
Length
87 bp
Sequences
Splice sites
3' ss Seq
GCTGCTCTGATCATTTGCAGGGA
3' ss Score
7.83
5' ss Seq
GAGGTAATT
5' ss Score
8.88
Exon sequences
Seq C1 exon
GAAGGAACATCCAAATTTGCAAATCTGGACAGCAGTGTGAAAGAAAATCAGAAAAGAACACAGAGACGTCTTCAGCTTCAAAAGGATATG
Seq A exon
GGAGTAATGCAAGGCACCGTCCCTTACCTCGGTACCTTTCTCACTGATCTCACCATGCTGGACACAGCCCTTCAGGATTACATCGAG
Seq C2 exon
GGTGGCCTGATAAATTTTGAGAAGAGGCGAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004728-'13-17,'13-16,14-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.133 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=FE(13.1=100)
A:
PF0061714=RasGEF=FE(12.7=100)
C2:
PF0061714=RasGEF=FE(4.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACATCCAAATTTGCAAATCTGGA
R:
CCTTCGCCTCTTCTCAAAATTT
Band lengths:
120-207
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]