MmuEX6028217 @ mm9
Exon Skipping
Gene
ENSMUSG00000026482 | Rgl1
Description
ral guanine nucleotide dissociation stimulator,-like 1 [Source:MGI Symbol;Acc:MGI:107484]
Coordinates
chr1:154383397-154387156:-
Coord C1 exon
chr1:154387067-154387156
Coord A exon
chr1:154384861-154384947
Coord C2 exon
chr1:154383397-154383429
Length
87 bp
Sequences
Splice sites
3' ss Seq
CTTCTCTGCTTCCTTTTCAGGGT
3' ss Score
12.79
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
Exon sequences
Seq C1 exon
GAAGGAACTTCAAAATTTGCAAACCTGGACAGCAGCGTGAAAGAAAACCAGAAGCGGACCCAGAGGCGCCTGCAACTGCAGAAGGATATG
Seq A exon
GGTGTGATGCAGGGTACCGTGCCTTACCTGGGCACCTTCCTGACTGACCTGACCATGCTGGACACTGCCCTGCAGGACTACATTGAG
Seq C2 exon
GGTGGACTGATCAACTTCGAGAAAAGAAGAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026482-'18-17,'18-16,19-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.267 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=FE(13.1=100)
A:
PF0061714=RasGEF=FE(12.6=100)
C2:
PF0061714=RasGEF=FE(4.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACTTCAAAATTTGCAAACCTGG
R:
CCTTCTTCTTTTCTCGAAGTTGATCA
Band lengths:
120-207
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: