RnoEX0075454 @ rn6
Exon Skipping
Gene
ENSRNOG00000002347 | Rgl1
Description
ral guanine nucleotide dissociation stimulator,-like 1 [Source:RGD Symbol;Acc:1308947]
Coordinates
chr13:69928434-69932214:-
Coord C1 exon
chr13:69932125-69932214
Coord A exon
chr13:69929799-69929885
Coord C2 exon
chr13:69928434-69928466
Length
87 bp
Sequences
Splice sites
3' ss Seq
CTGCTCTGCTTCCTCTTCAGGGT
3' ss Score
11.02
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
Exon sequences
Seq C1 exon
GAAGGAACCTCAAAATTTGCAAACCTGGACAGCAGTGTGAAAGAAAACCAGAAGCGGACCCAGAGGCGCCTGCAGCTGCAGAAGGATATG
Seq A exon
GGTGTGATGCAGGGCACCGTGCCTTACCTGGGCACCTTCCTGACTGACCTGACCATGCTGGACACTGCCCTGCAGGACTACATTGAG
Seq C2 exon
GGTGGACTGATCAACTTCGAGAAAAGAAGAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002347-'25-23,'25-21,26-23
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.233 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=FE(13.1=100)
A:
PF0061714=RasGEF=FE(12.6=100)
C2:
PF0061714=RasGEF=FE(4.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAACCTCAAAATTTGCAAACCTG
R:
CCTTCTTCTTTTCTCGAAGTTGATCA
Band lengths:
121-208
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]