BtaEX6070318 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019630 | RGL1
Description
ral guanine nucleotide dissociation stimulator-like 1 [Source:HGNC Symbol;Acc:HGNC:30281]
Coordinates
chr16:66412080-66417051:+
Coord C1 exon
chr16:66412080-66412169
Coord A exon
chr16:66415193-66415279
Coord C2 exon
chr16:66417019-66417051
Length
87 bp
Sequences
Splice sites
3' ss Seq
TTCTTGTGCTTGCTCTTCAGGGT
3' ss Score
9.84
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
GAAGGAACCTCGAAATTTGCAAACCTGGACAGCAGCGTGAAAGAGAACCAGAAGCGGACCCAGAGGCGGCTTCAGCTCCAGAAGGACATG
Seq A exon
GGTGTGATGCAGGGGACTGTGCCCTACCTGGGCACCTTCCTGACTGACCTCACCATGCTAGACACTGCCCTCCAGGACTACATTGAG
Seq C2 exon
GGTGGACTGATAAACTTTGAGAAGAGGAGAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019630-'15-17,'15-16,16-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.267 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=FE(13.1=100)
A:
PF0061714=RasGEF=FE(12.6=100)
C2:
PF0061714=RasGEF=FE(4.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACCTCGAAATTTGCAAACCT
R:
CCTTCTCCTCTTCTCAAAGTTTATCA
Band lengths:
120-207
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]