GgaEX0006482 @ galGal4
Exon Skipping
Gene
ENSGALG00000004728 | RGL1
Description
ral guanine nucleotide dissociation stimulator-like 1 [Source:RefSeq peptide;Acc:NP_001026442]
Coordinates
chr8:7696811-7699421:+
Coord C1 exon
chr8:7696811-7696900
Coord A exon
chr8:7698534-7698620
Coord C2 exon
chr8:7699389-7699421
Length
87 bp
Sequences
Splice sites
3' ss Seq
GCTGCTCTGATCATTTGCAGGGA
3' ss Score
7.83
5' ss Seq
GAGGTAATT
5' ss Score
8.88
Exon sequences
Seq C1 exon
GAAGGAACATCCAAATTTGCAAATCTGGACAGCAGTGTGAAAGAAAATCAGAAAAGAACACAGAGACGTCTTCAGCTTCAAAAGGATATG
Seq A exon
GGAGTAATGCAAGGCACCGTCCCTTACCTCGGTACCTTTCTCACTGATCTCACCATGCTGGACACAGCCCTTCAGGATTACATCGAG
Seq C2 exon
GGTGGCCTGATAAATTTTGAGAAGAGGCGAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004728_MULTIEX2-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.211 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=FE(13.1=100)
A:
PF0061714=RasGEF=FE(12.7=100)
C2:
PF0061714=RasGEF=FE(4.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACATCCAAATTTGCAAATCTGGA
R:
CCTTCGCCTCTTCTCAAAATTT
Band lengths:
120-207
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]