DreEX0061868 @ danRer10
Exon Skipping
Gene
ENSDARG00000005989 | rgl1
Description
ral guanine nucleotide dissociation stimulator-like 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1816]
Coordinates
chr8:19260708-19264234:-
Coord C1 exon
chr8:19264145-19264234
Coord A exon
chr8:19260949-19261035
Coord C2 exon
chr8:19260708-19260740
Length
87 bp
Sequences
Splice sites
3' ss Seq
ATCACTTTTTTTATCTCCAGGGT
3' ss Score
10.09
5' ss Seq
GAGGTGAAT
5' ss Score
5.37
Exon sequences
Seq C1 exon
GAGGGCACTTCAAAGTTTGCCAGTCTGGACAGCTGTGCCAAAGACCACCAAAAAAGGTCACAAAAGAGACTTCAGTTACAAAAAGATATG
Seq A exon
GGTGCCATGCAGGGGACTATCCCATACCTGGGTACATTTCTCACAGATCTGACCATGCTTGACACAGCCCTGCCTGACCAAGTGGAG
Seq C2 exon
GGAGGACTGATTAATTTCGAGAAGCGGCGCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000005989-'16-17,'16-16,17-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.133 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=FE(13.1=100)
A:
PF0061714=RasGEF=FE(12.6=100)
C2:
PF0061714=RasGEF=FE(4.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGCACTTCAAAGTTTGCCA
R:
TGCGCCGCTTCTCGAAATTAA
Band lengths:
120-207
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]