HsaEX0053319 @ hg19
Exon Skipping
Gene
ENSG00000205517 | RGL3
Description
ral guanine nucleotide dissociation stimulator-like 3 [Source:HGNC Symbol;Acc:30282]
Coordinates
chr19:11512891-11513382:-
Coord C1 exon
chr19:11513326-11513382
Coord A exon
chr19:11513131-11513217
Coord C2 exon
chr19:11512891-11512923
Length
87 bp
Sequences
Splice sites
3' ss Seq
TGGAGCTTTGGGGGCTGCAGAAA
3' ss Score
1.01
5' ss Seq
GAGGTCTGA
5' ss Score
2.68
Exon sequences
Seq C1 exon
GAGGAGGCCACTGAGGGATCCCAAGAAGAGGACAACACCCCAGGCAGCCTGCCCTCA
Seq A exon
AAACCACCCCCAGGCCCTGTCCCCTACCTTGGCACCTTCCTTACGGACCTGGTTATGCTGGACACAGCCCTGCCGGATATGTTGGAG
Seq C2 exon
GGGGATCTCATTAACTTTGAGAAGAGGAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000205517_MULTIEX1-1/6=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.207 C2=0.091
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=FE(8.5=100)
A:
PF0061714=RasGEF=FE(13.3=100)
C2:
PF0061714=RasGEF=FE(4.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGAGGCCACTGAGGGATC
R:
TCCTCCTCTTCTCAAAGTTAATGAGA
Band lengths:
88-175
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)