MmuEX0039591 @ mm10
Exon Skipping
Gene
ENSMUSG00000040146 | Rgl3
Description
ral guanine nucleotide dissociation stimulator-like 3 [Source:MGI Symbol;Acc:MGI:1918996]
Coordinates
chr9:21976945-21977429:-
Coord C1 exon
chr9:21977382-21977429
Coord A exon
chr9:21977190-21977276
Coord C2 exon
chr9:21976945-21976977
Length
87 bp
Sequences
Splice sites
3' ss Seq
TGAACCTTTGGGGGTTGCAGAAA
3' ss Score
4.34
5' ss Seq
AAGGTTTGA
5' ss Score
5.13
Exon sequences
Seq C1 exon
GAGGAGACCACTGAGGATGATGACTGCCCCTCAGGAAGTCTGCCATCA
Seq A exon
AAACTGCCCCCGGGTCCTGTCCCCTACCTTGGCACCTTCCTCACAGACTTGGTTATGCTGGATACAGCCTTACCGGATACGTTGAAG
Seq C2 exon
GGAAACCTCATCAACTTTGAAAAGAGGAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040146_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.069 C2=0.030
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=FE(7.2=100)
A:
PF0061714=RasGEF=FE(13.5=100)
C2:
PF0061714=RasGEF=FE(4.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGAGACCACTGAGGATGATGA
R:
TCCTCCTCTTTTCAAAGTTGATGAGG
Band lengths:
79-166
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types