DreEX6020291 @ danRer10
Exon Skipping
Gene
ENSDARG00000071213 | rgl3a
Description
ral guanine nucleotide dissociation stimulator-like 3a [Source:ZFIN;Acc:ZDB-GENE-101130-1]
Coordinates
chr6:7980666-7982361:-
Coord C1 exon
chr6:7982284-7982361
Coord A exon
chr6:7980798-7980884
Coord C2 exon
chr6:7980666-7980698
Length
87 bp
Sequences
Splice sites
3' ss Seq
CAGATTTTTTTTTCTAGCAGAGC
3' ss Score
5.14
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
GAGGGAAACCAGGCAGCGGATGTAGAAACTCACTCTGCTCCAAAGTCTCCCAGACTCAGTCCTACGTGTAAGCACATG
Seq A exon
AGCTCGTCCAGTGGTGAGGTGCCGTACCTGGGCACTTATCTGACCGTTCTCACCATGCTGGACACAGCGCTGACTGACAATGTAGAG
Seq C2 exon
GGAGGCCTCATCAACTTCGAGAAGCGACGAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000071213-'23-23,'23-22,24-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.717 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=FE(10.9=100)
A:
PF0061714=RasGEF=FE(12.2=100)
C2:
PF0061714=RasGEF=FE(4.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAACCAGGCAGCGGATGTAG
R:
CTCGAAGTTGATGAGGCCTCC
Band lengths:
95-182
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]