RnoEX0073763 @ rn6
Exon Skipping
Gene
ENSRNOG00000010219 | Ralgds
Description
ral guanine nucleotide dissociation stimulator [Source:RGD Symbol;Acc:3533]
Coordinates
chr3:7124339-7125288:+
Coord C1 exon
chr3:7124339-7124407
Coord A exon
chr3:7124735-7124809
Coord C2 exon
chr3:7125256-7125288
Length
75 bp
Sequences
Splice sites
3' ss Seq
TGCCCCAGGGTGTCATCCAGGGC
3' ss Score
1.54
5' ss Seq
TATGTGAGT
5' ss Score
5.56
Exon sequences
Seq C1 exon
GAAGGAACCTCCAAGTTTGCCACGCTGGAGATGAACCCTAGGAGAACCCAGAGGCGGCAGAAGGAGACA
Seq A exon
GGCACTGTCCCCTACCTGGGCACATTCCTCACTGACCTGGTGATGCTGGACACAGCCATGAAGGACTATCTATAT
Seq C2 exon
GGGAGACTGATCAACTTTGAAAAGAGGAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010219-'17-25,'17-24,18-25
Average complexity
S*
Mappability confidence:
88%=100=75%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.478 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=FE(10.2=100)
A:
PF0061714=RasGEF=FE(13.0=100)
C2:
PF0061714=RasGEF=FE(4.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAACCTCCAAGTTTGCCAC
R:
TCCTCCTCTTTTCAAAGTTGATCAGT
Band lengths:
98-173
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]