HsaEX0052080 @ hg19
Exon Skipping
Gene
ENSG00000160271 | RALGDS
Description
ral guanine nucleotide dissociation stimulator [Source:HGNC Symbol;Acc:9842]
Coordinates
chr9:135978617-135979718:-
Coord C1 exon
chr9:135979650-135979718
Coord A exon
chr9:135979134-135979220
Coord C2 exon
chr9:135978617-135978649
Length
87 bp
Sequences
Splice sites
3' ss Seq
CTCCTACCCCAATGTCACAGGGC
3' ss Score
5.85
5' ss Seq
TATGTGAGT
5' ss Score
5.56
Exon sequences
Seq C1 exon
GAGGGCACCTCCAAGTTTGCCACCCTGGAGATGAACCCCAAGAGAGCCCAGAAACGGCCGAAGGAGACG
Seq A exon
GGCATCATCCAGGGCACCGTTCCCTACCTGGGCACGTTCCTCACCGACCTGGTGATGCTGGACACTGCCATGAAGGACTATCTGTAT
Seq C2 exon
GGCAGACTCATCAACTTTGAGAAGAGGAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160271_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.507 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=FE(8.7=100),PF139001=GVQW=PD(0.1=0.0)
A:
PF0061714=RasGEF=FE(13.0=100)
C2:
PF0061714=RasGEF=FE(4.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCTCCAAGTTTGCCACCC
R:
TCCTCCTCTTCTCAAAGTTGATGA
Band lengths:
95-182
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)