GgaEX0004459 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1C4E7]
Coordinates
chr17:6792032-6792616:-
Coord C1 exon
chr17:6792539-6792616
Coord A exon
chr17:6792366-6792452
Coord C2 exon
chr17:6792032-6792064
Length
87 bp
Sequences
Splice sites
3' ss Seq
CATCCCTCGCTGTCCCCCAGGGT
3' ss Score
9.05
5' ss Seq
GACGTACGT
5' ss Score
9.08
Exon sequences
Seq C1 exon
GAGGGCACGTCCAAATTTGCCACCTTGGAGATCAACCCAAAGAGGGCCCAGAAGCGGCAGCAGCAGCAGAGAGAGATG
Seq A exon
GGTGTGATGCAGGGCACCATTCCCTATCTCGGCACCTTCCTCACGGACCTGGTGATGCTCGACACCGCCATGAAGGATTTCCTGGAC
Seq C2 exon
GGAGGGCTGATCAACTTTGAGAAGAGAAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003412_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.346 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=FE(11.5=100)
A:
PF0061714=RasGEF=FE(12.8=100)
C2:
PF0061714=RasGEF=FE(4.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGGCACGTCCAAATTTGC
R:
CTTCCTTCTCTTCTCAAAGTTGATCA
Band lengths:
111-198
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]