DreEX6050573 @ danRer10
Exon Skipping
Gene
ENSDARG00000042409 | RGL4
Description
ral guanine nucleotide dissociation stimulator-like 4 [Source:HGNC Symbol;Acc:HGNC:31911]
Coordinates
chr8:30945133-30945611:-
Coord C1 exon
chr8:30945534-30945611
Coord A exon
chr8:30945263-30945349
Coord C2 exon
chr8:30945133-30945165
Length
87 bp
Sequences
Splice sites
3' ss Seq
TTTTTGTCTGTGTTGTTTAGGGT
3' ss Score
9.49
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
GAGGGCACCTCTAAATCTGCCATAGTCGAGATAAACCACAAAGGAGCCCAGAGGAGACACCAGCAGCAAAGAGACATG
Seq A exon
GGTGTTGTGCAAGGAACGATTCCATACCTTGGCACTTTTCTGACTGACCTCGTCATGTTGGATACTGCTATGAAAGACCATCTGGAG
Seq C2 exon
GTCGGACTGATTAACTTTGAGAAGAGAAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000042409-'9-12,'9-11,10-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.231 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=FE(11.5=100)
A:
PF0061714=RasGEF=FE(12.8=100)
C2:
PF0061714=RasGEF=FE(4.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCACCTCTAAATCTGCCATAGT
R:
TTCTCTTCTCAAAGTTAATCAGTCCG
Band lengths:
103-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]