HsaINT0141188 @ hg19
Intron Retention
Gene
ENSG00000128482 | RNF112
Description
ring finger protein 112 [Source:HGNC Symbol;Acc:12968]
Coordinates
chr17:19318599-19318905:+
Coord C1 exon
chr17:19318599-19318652
Coord A exon
chr17:19318653-19318830
Coord C2 exon
chr17:19318831-19318905
Length
178 bp
Sequences
Splice sites
5' ss Seq
GAGGTATGA
5' ss Score
8.55
3' ss Seq
CTGGGTTTTCCCGTGGACAGATG
3' ss Score
7.22
Exon sequences
Seq C1 exon
AACCTCTCAGGATGGATGGGGAGGACAGGGCCCGGTTTCACCTCTCCGGATGAG
Seq A exon
GTATGAGCGCTGGGGGATCCAGCATTCTGGCAGGGAGACAGGGGAGGCAGGGAGGTGGGGGCTGTGCCGAGGCCTCCGGGGTGGGGGTCTGTGTGCCCTGGGAGTGGAGATGAGGAAACAAGCAGCGCCCCTGGCTGAGAAGGAAGGAAGGAGGCAGCCTGGGTTTTCCCGTGGACAG
Seq C2 exon
ATGGCTGCTCAGCTGCACGACCTGAGGAAGGTGGAAGCTGCCAAGAGGGAGTTCGAGGAGTATGTGAGGCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000128482-RNF112:NM_007148:12
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCTCTCAGGATGGATGGGG
R:
GCTGCCTCACATACTCCTCGA
Band lengths:
127-305
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)