MmuINT0135414 @ mm9
Intron Retention
Gene
ENSMUSG00000010086 | Rnf112
Description
ring finger protein 112 [Source:MGI Symbol;Acc:MGI:106611]
Coordinates
chr11:61263469-61263745:-
Coord C1 exon
chr11:61263692-61263745
Coord A exon
chr11:61263544-61263691
Coord C2 exon
chr11:61263469-61263543
Length
148 bp
Sequences
Splice sites
5' ss Seq
GAGGTAATG
5' ss Score
8.73
3' ss Seq
CTGGGTTTTCCTGTGGACAGATG
3' ss Score
6.91
Exon sequences
Seq C1 exon
AATCTCTCTGGCTGGATGGGGAAGACTGGGCCCAGTTTCAACTCTCCTGATGAG
Seq A exon
GTAATGAGCGCCTCTCCCCGGGAAGGCTAGGGTCAGGGAGGGTGACCTGAGGTAGGGGTCTGCATGTCCTGGAAGCAGAGATGAGGGACCAGGAGGATCCCTGGATGAGGAGGAAAGAGGCAGGCAGCCTGGGTTTTCCTGTGGACAG
Seq C2 exon
ATGGCTGCTCAGCTCCATGATCTGAGGAAAGTGGAAGCCGCCAAGAAGGAGTTCGAGGAGTACGTGAGACAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000010086-Rnf112:NM_009548:13
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.611 A=NA C2=0.160
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATCTCTCTGGCTGGATGGGG
R:
GCTGTCTCACGTACTCCTCGA
Band lengths:
127-275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: