RnoINT0127582 @ rn6
Intron Retention
Gene
ENSRNOG00000002364 | Rnf112
Description
ring finger protein 112 [Source:RGD Symbol;Acc:3986]
Coordinates
chr10:47720540-47720816:-
Coord C1 exon
chr10:47720763-47720816
Coord A exon
chr10:47720615-47720762
Coord C2 exon
chr10:47720540-47720614
Length
148 bp
Sequences
Splice sites
5' ss Seq
GAGGTAATG
5' ss Score
8.73
3' ss Seq
CTGGGTTTCCCCGTGGACAGATG
3' ss Score
6.35
Exon sequences
Seq C1 exon
AACCTCTCCGGCTGGATGGGGAAGAGTGGGCCCAGTTTCAGCTCTCCAGATGAG
Seq A exon
GTAATGAGCCCCTCCCCTTGGGAAGGATAGGGTCGGGGAGGGTGGCCTGAGGTAAGGGTCCGCATGCCCCGGGAGAGGAAATGGAGGATCGGGGATATCCCTGGTTGAGGAGGAAAGAGGCAGGCAGCCTGGGTTTCCCCGTGGACAG
Seq C2 exon
ATGGCTGCTCAACTTCATGACCTGAGGAAAGTGGAAGCCGCCAAGAAGGAGTTTGAAGAGTATGTGAGACAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002364:ENSRNOT00000003228:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.278 A=NA C2=0.120
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCTCTCCGGCTGGATGG
R:
CTGCTGTCTCACATACTCTTCA
Band lengths:
129-277
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]