HsaINT0144772 @ hg19
Intron Retention
Gene
ENSG00000167100 | SAMD14
Description
sterile alpha motif domain containing 14 [Source:HGNC Symbol;Acc:27312]
Coordinates
chr17:48191551-48191804:-
Coord C1 exon
chr17:48191721-48191804
Coord A exon
chr17:48191671-48191720
Coord C2 exon
chr17:48191551-48191670
Length
50 bp
Sequences
Splice sites
5' ss Seq
ATGGTGGGT
5' ss Score
6.18
3' ss Seq
ATGCACCTTTTTCTGTCTAGGAA
3' ss Score
9.1
Exon sequences
Seq C1 exon
GCCCAGCTCCTGGCTCATGCACAGGAGGCACTGAGCAACTCCTGGTGCCTAGTCCAGGACTTCGGCTCCACCCAGATAGGGATG
Seq A exon
GTGGGTTGGGGGTGAACTCTCCTCAGTGGCATGCACCTTTTTCTGTCTAG
Seq C2 exon
GAATCCACTCTGAGTGATGACTCCACGCCCCCCAGCAGCAGCCCCAAGATCCCCAGTGGGCCCTGGCAGGAGGCCAAATGTTCTTACCCCTACCACACGCTGTCTCAGTCTTCAGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167100-SAMD14:NM_174920:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.214 A=NA C2=0.650
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTTCGGCTCCACCCAGATA
R:
GAAGACTGAGACAGCGTGTGG
Band lengths:
140-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)