MmuINT0138655 @ mm9
Intron Retention
Gene
ENSMUSG00000047181 | Samd14
Description
sterile alpha motif domain containing 14 [Source:MGI Symbol;Acc:MGI:2384945]
Coordinates
chr11:94882863-94884692:+
Coord C1 exon
chr11:94882863-94883022
Coord A exon
chr11:94883023-94884572
Coord C2 exon
chr11:94884573-94884692
Length
1550 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
3' ss Seq
ACACGTCCCTTTCCATGTAGGAA
3' ss Score
9.51
Exon sequences
Seq C1 exon
GGAGTCTGTAGAAGGTTCTGGAAGGACAGGAAGCTCCCCGTTCCTGCCCTTTTCCTGGTTCACGGACAGCGGCAAGGGCTCTGCTTCCTCGGGGAGTACCACCTCCCCGACCTGTTCCCCCAAACACGAGGGCTTCAGCCCCAAGAAGTCAGCTTCCCAG
Seq A exon
GTAAGCCCAGGTCTTCATTCCTTCTTTTTCTCCTTCCTTCTTCTCATCTATCCTTCCCTCCCTTCTTTCTTTTTCCCTGCTGAGGCAGTCTTACTCTGTAGCCCAGGCTGGCCTGGAACTACACAGCCTCTTGCCTTAGCCTTCTGTGTGCTGGGACTAGAAGAATGTGCCATCCTTCCCAGTGTAACCCCGGGACGTTCTTGCCCCACACTGGCTTCTAGGCTCAGGACAAGAACATACTTCATCGTGGCTTGGACTGGGACCCAGGTTTTTCTGGGACCCATAGTGTCCCTCTACAGAGCTGCCTGGTGACTCATGGCTTGCTTCTACTCTCTGGCTTCATTCAGTCATGCCTCGTGCGTTCGTACCCATTCGTATTTCATGTGTTTATACTGCTCCCTATACTCAGAACTCCTGTGGGAACACTGAGGCCCTCCACTGCTCACTCAGTCTGAGGAGCCCTTCTTCTTACTGTTCTGCCTGAGTCAGGTCTGGACTGTGCAGTGCCATCAAGAGCTGGCCATGTGCATGATGGGAAGTCTTGGAGATAGCGGAGATGAGCAGGACCCCCACGTAGTCTTCTGAAAGCTCCAGACCCTAGGCGATAGGAACCATCAACACAACCAATACTAATGTCTCCTTATGTTCACAAAGACCACTATTGTCTGTGGCTTTAACTGTGACTTAGGCAAGGTAGTCATTATTATCTGCATTGTACAGATAAGCAAATGAGGTTTGGGGAAAAGGGGACTCACCCACAGATGTGCACAGCTGTGTATGGTGCTGGGGCTTAGGGGAATCAGAAATCGTGGGATTCAGGGGAAAGGCCCGTCTGATGTGCAGCTTTAGTCTATAACCACCTGATAGTCTTCCTCAGTCCCTCCCTTTGTGCTGGTCCCAAGGGACACCATGCTGAGAGAGAGACAGCCCAAGTCCTCACAGAGATTCAAGGCCATTTGGGGGTACCCACCAGCCAGGATGCAAGAGTTCTAGGAGAAGGATTCTTTTGTAAAAGACTTATTTACGTATTATGTAAACAAGTGTTCTGCCTGCGTGTATGCCTGCAGGCCAGAAGAGGGCGCCAGATCTCCTTATAGACGGTTCTGAGCCACCATAGGGTTGCTGGGAATTGAACTCAAGACCTCTGGAAGAGCAGCCAGTGCTCTTAATGTAACCCGTGAGCCATCCCTCCAGCCCAGGAGAAGAATTGTTATGTAACAGGGACACAAGACCTAGCCTGGGGGGAGGGATTCTGGTAAGCTGCCTATAGGGAACAGCACCTAGCCCCCTCCATTCCTCTTCATCCATCAGCCTAACTTAATGCTAGGACTATGTCCTCTAGGTAGTCCGCTCCCTCCTAGAGGGCTCAGGTTCTGATATGTCACTTCAGTCATCACAGCCTGTGTCTGGCTGTCTAGTTCTGAGTTCCTGGTCCTGGAGCATTGAACGGCTGCTGGTGCCTAGTGTAGTATTTCAGCTTGCTCTGGTCAGGTGATGGGCTTGGGGTGGGAGGTGGACTTACTTCTCGGCACACGTCCCTTTCCATGTAG
Seq C2 exon
GAATCTACCCTGAGCGATGACTCCACACCCCCCAGCAGCAGCCCCAAGATCCCCGGTGGTCCTCGACAGGAGACCAAGTGTTCCTATCCCTACCACACGCTGTCCCAGTCTTCGGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047181-Samd14:NM_146025:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.889 A=NA C2=0.825
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGTCTGTAGAAGGTTCTGGA
R:
CTCATCCGAAGACTGGGACA
Band lengths:
280-1830
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: