HsaINT1040836 @ hg38
Intron Retention
Gene
ENSG00000167100 | SAMD14
Description
sterile alpha motif domain containing 14 [Source:HGNC Symbol;Acc:HGNC:27312]
Coordinates
chr17:50114187-50115723:-
Coord C1 exon
chr17:50115564-50115723
Coord A exon
chr17:50114307-50115563
Coord C2 exon
chr17:50114187-50114306
Length
1257 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
ATGCACCTTTTTCTGTCTAGGAA
3' ss Score
9.1
Exon sequences
Seq C1 exon
GGAGTCAGTGGAGGGGTCCGGCAGGTCAGGGGGCTCCCCGTTCCTGCCTTTTTCCTGGTTCACGGACAGCGGCAAGGGCTCAGCATCCTCGGGTAGCACCACCTCCCCCACCTGCTCCCCTAAACACGAGGGCTTCAGCCCTAAGAAGTCAGCTTCCCAG
Seq A exon
GTAAGTCCATGCCTTTCTTGTCCCCAAACTGGCCCCCAGTCTCAGGTGACATGAGGGCGTACTTCACCTTGGCTCAGGCTGGGATTCAGACATTCCTGGAATCAATTTGTCCATCCATGGAGCCATGCAGTGATCCGTTACTTCATGCATTCTCTGAATTCATTCGTTCACTCTTCCACTCCTTCATATTCTGAGTAGTTCATTCCTTGATTCAGTCAATGCTTCATGCATTCAACAAATCACTAAACACTGATTCCCTACTGTTCACCCAGCTGGAGACTTCCTTCATTCCTGCTAACTCTTCTGCCTGGTTAAGTTCTAACCCCACTCCTGTGTGAGGAGCTGGGCCACCTGCTTGGTAGGGTGAGGCCTGGGGGATATAGAGACAAACAGGACCCCAACCTAGTGGTCTGAAAGCTTACAACCCTATGTGATGTGAGACGAGTAAGAGAAGCAATGATGAGCAACTGCTTATGTTCAGAGCGCCCTCTACAGTTTACAAAGCCCCAAATGCGTTTCTGCTTTACTCTCACAAAGGCTCGGTGAAGTAGGGAGGGAAGGCATGCTCATCTCCATTGTACAGATGAGCAAAGGAAGGCCCAGAGAGAAGGGGCTTGCCCACAGACTGGCACAGATATAGGTGCCAAGCTCTACAACCCCCAGCCCAGTACTTGTTCTACGGTTCTGTTTCTTACGTGCAGCTGGGCAGAGGAGAAAATCAGAAGCTGGGAATTCTGGGAAGAAAGAATCCCTTCGGACCTGGAACTTCCTTCTTTCCTCCTTCTCTTTCTTCCTTCCCTTATGCTGGTCACTGGGACACCATGATGAACAAGATACAACCCAGGCCCTCCTAGAGCTCACAGTCCAGTGAGGATAAAGACCTCTAATCAGGCACTTATTAGCTGGGGTACTAAGGCCAGGCGGGAGGCGCATAGCAGAGACACCTGACCCAGCCTGGGGGAATCTCGGTGGTCTGCCTGTAGGAAGTGACACCTTGCCTGAGACCGCCTCCATTCCTACTAACCTGGCTTGGTTCTAGCCCCATGTCCTCCAGATGGCTGCCTGCTCTCCCAAAGGCTTCAGGTCCTGATGCCTGACATGAGTTATCATGTCCTGTGTGCAGGCCCAGCTCCTGGCTCATGCACAGGAGGCACTGAGCAACTCCTGGTGCCTAGTCCAGGACTTCGGCTCCACCCAGATAGGGATGGTGGGTTGGGGGTGAACTCTCCTCAGTGGCATGCACCTTTTTCTGTCTAG
Seq C2 exon
GAATCCACTCTGAGTGATGACTCCACGCCCCCCAGCAGCAGCCCCAAGATCCCCAGTGGGCCCTGGCAGGAGGCCAAATGTTCTTACCCCTACCACACGCTGTCTCAGTCTTCAGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167100:ENST00000330175:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.895 A=NA C2=0.675
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGTCAGTGGAGGGGTCC
R:
CATCTGAAGACTGAGACAGCGT
Band lengths:
278-1535
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains