RnoINT0130547 @ rn6
Intron Retention
Gene
ENSRNOG00000004155 | Samd14
Description
sterile alpha motif domain containing 14 [Source:RGD Symbol;Acc:1306138]
Coordinates
chr10:82831169-82833030:+
Coord C1 exon
chr10:82831169-82831328
Coord A exon
chr10:82831329-82832910
Coord C2 exon
chr10:82832911-82833030
Length
1582 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
3' ss Seq
GTGCATCCTTTTCTGTGTAGGAA
3' ss Score
8.83
Exon sequences
Seq C1 exon
GGAGTCTGTAGAAGGCTCTGGAAGGACAGGGGGCTCTCCATTCCTGCCCTTTTCCTGGTTCACAGACAGCGGCAAGGGCTCTGCTTCCTCGGGGAGCACCACCTCTCCAACCTGTTCCCCCAAACATGAGGGCTTCAGCCCCAAGAAGTCAGCTTCCCAG
Seq A exon
GTAAGCCTCTTCTTATTCTTTCTTTTTCTCCTTCTTTCTTCTCACCCATCCTTCCTTCCCTCCCTTCTTCCTTTTTCCCTGCTGAGGCAGTCTTACTCTGTAGCCCAGGCTGGCCTAGAAGGACAAACCCTCTTGCCTTAGCCTTCTTAGTGCTGGGACTGCAAGACCGTGCCCTCCTTCCCAGTGTAACCCCAGGACTGGCTTGCCTAGCACTGGCTTCTAGACTCACGACAAGGACATGCATACTTTGTCGTGGCTTGGACTGGGAGCCCAGGTTTTTCTGGGACCCATAGTGTCCCACCACAGAGACGTCTAGTGACTCATGACTTGCATCTACTCTCTGGCTTCATTCATTCATGGCTCATGCATTCATACCCATTTGTATTTCATGCATTTGTTGATTCTGCTTCCTATGCTCAGCACTCGTGTGGGAACACTAACACCCCCTCCCAACTCAATCTGAGGAACCCTTGCTTCTGCCTGAGGCTACACCATTACAAGCTGGCCATCTGCACGGTGGGAAGTTTTGGATATGGGGATGAGCAGGACCCCTACCTAGTCCTCTGAAAGCTTCAAACCCTAGGAAACAAGAATCATCACCACAATCAATACTAAAGTCTCCTTATGTTCACAAAGACCACTATACGGTACAAGGCCCACTATTGTGTGTGACTTTAACTGTGATGTAGGCAAGGAAGTCATTGTTATCTGCACTGTACAGATGAGCAAATGAGGTTCAGAGAAAACTCGCCCACAGATGTGCACAGCTGTGGATGGCGCTAGGGCTTAGGAGAATCAGAAGTGTGGGGTTCAGGGGAGAGGCCCTTCTGATGTGCAACTTTCTTTAACCACCCGATATTCTTCCTCGGCTCCTCCCTTTGTGCTGGTCCCAGGGGACACCATGATCAGTGAGACAGCCCAAGTCCTCACAGAGCTCCAAGGCCAATGGGTGTACCCACCAGCCAGGATGCAAGAGGCCTAGGAGAAGAATTTTTTTAAAGATATTTATTATGGGGGTTGGGGATTTAGCTCAGTGGTAGAGCACTTGCCTAGCAAGCGTTCGGTCTCCAGCTCCGGAAAAAAAAAAAAAAAAAAAAAAGATATTTATTATGTAGACAGTGTTCTGCCTGCATGTACGCCTGCAGGCCAGAAGAGGGCGCCAGATCTCATTATAAATGGTTGTGAGCCACCGAATGGTTGCTGGGAATTGAACTCAGGACCTCTGCCAGTTCTCTTAACTTGTGAACCATCTCTCCAGCCCAGGAGAAGGATTTTATGTAACAGGGTCACATGATCCAGCCTGGGGGAGGGATCCTGGTAGACCACCTACAAGAAACAGTACCTAACCCCCTCCATTCCTGATAATTCGTCTACCTAACTTAACGCTAGGACCATGTTGTCTAGACTGGGGTTCTGATATGTCACTTCCGTCATCGCAGGCTCTGTCTGGCTGCCTCGTTCCTAGTCCTGGAGCACTGAACAGCTGCTGGTGCCTAGTTTAATATTTCAGCCCCATCTGGTCAGGTGATAGGCTTGGAGGTGGGAGGTGACCTTACTCCTCCGTGCATCCTTTTCTGTGTAG
Seq C2 exon
GAATCTACCCTGAGCGATGACTCCACACCTCCCAGCAGCAGCCCCAAGATCCCCGGTGACCCTCGACAGGAGACCAAATGCTCCTATCCCTACCATACGTTGTCCCAGTCCTCAGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004155:ENSRNOT00000005519:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.824 A=NA C2=0.825
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCTGTAGAAGGCTCTGGAAGG
R:
CTCATCTGAGGACTGGGACAAC
Band lengths:
278-1860
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]