HsaINT0145301 @ hg38
Intron Retention
Gene
ENSG00000173611 | SCAI
Description
suppressor of cancer cell invasion [Source:HGNC Symbol;Acc:HGNC:26709]
Coordinates
chr9:124994934-124999990:-
Coord C1 exon
chr9:124999891-124999990
Coord A exon
chr9:124995016-124999890
Coord C2 exon
chr9:124994934-124995015
Length
4875 bp
Sequences
Splice sites
5' ss Seq
CTGGTATGT
5' ss Score
8.14
3' ss Seq
CTTCGTTGTTGTTTTCCCAGCCT
3' ss Score
6.06
Exon sequences
Seq C1 exon
GTCCTTATGATTTTGGAGGTGTACTTACTAATAGTAACCGGGATATTATTAATGGAGATGCCATCCACAAACGAAATCAGTCCCACAAGGAAATGCACTG
Seq A exon
GTATGTATTCTGGTGTCTACTCTTATTATAAAAATTATACCTCTGTCTATAAATAGAAAAAATATTAAGTAAAATGGGGAGTTTTTTCTAGTACTAGAATGATTCCCTTAGACTAAGATTTAGGGACAGACCAGAAACACTTATTTGGATTCCAGCAATAATTCAGGCTCTGTCTATCCTAGGAAATTAGAACTTTTGGTTGATATTCATTGAATAAATATGTTACACACTGTTTAGTCACTAGGGATATGTCAGTGAACAAAATTGCATTCTAGTTGGAGACAGTAAATATATACATAAATAAATAATATGTCAGGACATTATACATGTAACATCAATACGAACTTTTAAACAAATTTTTTTCTTGAGATGGAGTCTTCCTCTGTCACTCAGGTCAGTCTTGATTTCCTGGCCTTAAGTGATTCTCCCACCTCAGCTTCACAAAGTGCTAGGATTACAAGATGTGAGCCACTGTGTTCAGCCCAAACATTTTTTTTTTTTTTTGAGATGGAGTCTTGCCCTGTCACCCAGGCTGGAGTGCAGTGGCATGATCTCGGCTCACTGCAACCTCTGCCTCCTGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCTGCGTAGCTGGGATTACAGGCACCAGCCACCATGCCCGGCTAATTTTTGTATTTTTAGTAGAGATGGGGTTTTACCATGTTTGTCAGGCTGGTCTTGAACTCCTGACCTTGTGATCCACCTGCCCCGGCCTCCCAAAGTGTTGGGATTACAGGTGTGAGCCACCGTGCCCGGCCACATTTTATTTTATTTTATTTTTTTAATTGAAAAATAATCATTGTAAATATTCCTGGGGTACTTAATGATGTTTCTATATTTGTAATGTATTGTGATCAGATCAGAGTAATTAGCATACTTATCATCTCAAACATCCATTCCTTGTGTTGGGAACATTTAATATCTTTTTTCTAGCTATTTATGATAAAGGCTGATAGCAGTGGCTCACACCTGTAATCCCAACACTTTGGGAGGCCGAGATGGGTGGATCACTTGAGGTCAGGAGTTTGAGACCAGCTTGGCCAACATGAAACCCTGTCTCTACCAAAATACAAAAATTAACCGGGTGTGGTGGCTTGCGCCTGTGGTCCTACCTACTCAGGAGGCTGAGGCAGGAGAATCACTTGAACCCATTAGGTCGAGGTTGCAGTGAACTGAGATTGTGCTCCAGTCTGGGTGATAGAGCAAGACTCTGTGTCAAAAAAACAAAAAAGAGAAAATAAAAACTATATAACATATTATTAACTATAGTCATGCTACAGTGGTATAGAACACTAGAACATATTCCTTCTATCTAGCTGTAATTTTTTAATCTTTAACAATCTCTTCCCTATACCTCCGTTCCCCGTTCCCCTACCCTTCCCAACCTCTAGTATTGAGTTTGTTTTTTTTTTGAGATGGAATCTTGCTCTCATGCCCAGGCTAGAGTGCAGTGGCACGATCTTGGCTCACTGCAACCTCCATCTCCCAGGCTCAAGTGATTCTCCTACCTCAGCCTCCCAAGTAGCTGGGATTACAGGTGGCCACCACCACGCCTGGCTAATTTTTTTATTTTTCATAGAGATGGGGTTTCGCCATGTTGACCAGTCTGGTCTCGAACTCCTGACCTTAGCCTCGGCCTCCCAAAGTGCTGGAATTACAGGCATGAGCCACCGCGCTGGGCCTGAATTTTTTAATACAAGGTTTTGTTGGTTTAATATAGCACAAATGAATGTTGTTACATGATTACAAATAGAACTTCAGGCCAGGAGCAGTGGCTCATGCCTATGATCCCAACATTTTAGGAGGCTGAGGTAGGAGGATCACATGAACCCAGGAGTTTGAGACCATCCTGGGCAACTTAGTGAGACTCTGTCTCTACAAAAACTTAAAAAAAAATTTTTTTAAATGCAAAAAATACAAAAGCAAATAGAATTTCATCTACAAAAGTTCTTTTTCTTTTTTCTTTTCTTTTCTTTTTTTTTTTTTTTTGAGACAGAGTTTTACTCTGCCGCCCAGGCTGGAGTGCAGTGGCACTATCTTGGCTCACTGCAACCTCTGCCTTCCGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGATTATAGTCATGCATCACCACACCCAGCTAATTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCATTCTGGTCTTGAAATGCTGACCTCAAGTGATCCGCCTGCTTTGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGTGCCTGGAGTTCATTCTTTTTCTAAGCATAACAACTTCATTGCTTGGGCTGTTATTGGCTCATTGGCTCTAGAATTTTTCTAGCTGAGAGCAATCTGGTTATAAAGAAAACTGGACTGGTCTAAAACTTTGTTTCTAATACATATTGAATATCCCTTATCTGAAATATGTGGGACCAAAAGTGTTTCGGGTTTTGGATTTTTCCAGATTTTGGAATATTTGTATATAGATAGTAAGGTACCTTAGGGATGGGACCCATGAAATTGACTTGTGTTTCATATACAACTCATACACATTGCCTGAAAGTAATTTTATTTTTCCCTTTGAGATCCTGGATAAACTATGTGTTGTGCACCTGCATGACTATGATCCATCATGTGAGGTCAGGTGTGGAATTTTCTACTTGTGGCATCGTGTTGGCTCTGAAAACTTTTTGGATTTTGGAGCATTTTTCGTTTTGGATTTTCAGATTAGGAATACTGAACCTGTATGGCATGATCACTTATATGTGGAATCTGAAAAAGTTGCACTCAGAAGCAGAGTGCAACGGTAGTTCTGAGGAGCTGAGGATTGGGGAAAATAGGGAGATGTTGGTTAAAGGGTGCAGCCTCTCAGTTGTAAGATAAATATCATTTAAAGTACAGCATGGTGGTGATAATTAAAAATACTATATTGGCTGGGTGCAGTGGCTCAGGCCTGTAATGTCAGCACTTTGGGAGGCCGAAGTGGGCGGATCACTTGAGGTCAGGAGTTCGAAAACAGCCTGGCAACATGGTGAAATCCCATCTCTACTAAAAATACAAAAAATTAGCCGGGTGTGGTGGCATGTGCCTGTAATCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATTGCCTGAACGTGGGAGGCGGAGGTTGCAGTGAGCCGAGATCATACCACTGCACTCCAGTCTGTGTGACAGAGCGAGACTCCATCTCAAAATAAATAAATAAAAAAAAATAAATGAAAATACTGTATTGTTGGACCGAGCATGGTGGCTCATTCCCGTAATCTCAGCACTTTGGGAGGCTGAGATGGGAAGATTGCTTGAGTTCAGGAGTTCAAGACCAGCCTTGGCAACATAAGAGGATCTTGTCTCTACTAAAAATGTAAAAAATGAGCCAGGCGTTGAGGTGCACGCCCATGGTCCCAGCTACTTGGGAGACTGAGGCAGGAGTATCACTTGAGCCTGGGAGATCGAGGCTGCAGTTAGCTATGATCTTGCCACTGTACTCCAGTCTTGGTGACAAAGTGAGACCCCATCTCAAACAACAACAATAACAAAAATTGTTGTTTACTCGAAATTTTCTGAAAGAGTAAAGCTTATGTGTCCTCTCTGCCCACTGCCCCCAGCACCACCCCCCCACCCCCGCCCCACCGCCCACACACACGAAGGGTAACGGTGTGGGAATGGAGGTGTTGATTAATTTGATCGTGGTAATCACTATACATGTATGCATTAACAAGTCATCACATTGTATACCTTGAATATATACAATTTTTATTTGTCAATAAAAGAAAAACTTTTATTTGAAATATAATGAAGTTTGATGATATTGCTCAGTGAAACATTCATAAATTTACATTTACATTAGTATCTATCCACATATGCACATCGTGTACTCAGTCATCGGAAAGAGCACGCACACCAAGATTCTGACCTTACGCATTGGCTCTCACATGCATGTTACTGGATTTCCGCCTTTGGGTTCAGTAGCTCTTCTGTGGGCCAGTCAAACTGCATGTTTAACAAGCCCTTGATGCAAATGTTTAGAGGAAACATATGGTAAAAAGTAGCTGGGCACAGTGACTCATGCCCATAATCCTAGCACTTTGGGAAGCTGAGGTGGGCAGATTGCTTGAGCTCAGGAGTTCGAGACCAGCCTGGGCAATATGGAGAAACCCCATCTCTACTAAAAAGAGAAAAATTAGCTGGTTGTGTTGGTACATGTCTGCAGTCCCAGCTACTCAAGGAGGCTGAGGTGGGAGGATCACCTGAGCCCGGGACATGGAGGTTGCTGTGAGCTGCGATTGCACAACACCACTGTACTCCAGCCTGGGCCACGGAGCAAGACGGTGTCTTTAAAAAAAAAAATAGTGATAGTAAAAAGATTTTCCTACTTACTACCTGCAGTATTAAGATGTAGCCTGAAATATTAAAAATCTTTAAAATAGAAATTTTGAAGACTCATTGAAATACAAATCTGGTTTTGTTATTACATCTTGTTTCCAGATGTTCTTACAAGGAGCTTTTAAATATGAAACAGGTATCTGTTTGCCAGCTTCTGAGGTTTTCATGCTGTGTGTTTAGTCATCTTTAAATACACAGACTTCACTTTAGCTTAGATATTCTTGAATAACAATTGTCTCTGAACTTTTTTTTTTTTCTCCAAATAGAACTATCTTGGCTATCCTAGTAAATACAGGCTTTTTTTCCCCTTTGCTTAACTAGTCTTTGTTTTTCTCTCAGTGCTATGATGCAAAGGAGATATGAGCAGACCAAACTGAAGAATAAGATTTCTGAGATGTGGCTGACACAGTTTAACAGTTCTTCGTTGTTGTTTTCCCAG
Seq C2 exon
CCTTCATCCCGGGGATCTCTATCCTTTCACCAGGAAGCCACTGTTCATCATTGTGGATTCGTCTAATAGTGTTGCGTATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000173611:ENST00000336505:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.287 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF120703=DUF3550=PU(13.3=90.9)
A:
NA
C2:
PF120703=DUF3550=FE(36.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains