HsaINT0145309 @ hg38
Intron Retention
Gene
ENSG00000173611 | SCAI
Description
suppressor of cancer cell invasion [Source:HGNC Symbol;Acc:HGNC:26709]
Coordinates
chr9:125026812-125028478:-
Coord C1 exon
chr9:125028392-125028478
Coord A exon
chr9:125026911-125028391
Coord C2 exon
chr9:125026812-125026910
Length
1481 bp
Sequences
Splice sites
5' ss Seq
TTAGTAAGT
5' ss Score
7.79
3' ss Seq
AAATATATTTTTTCTCATAGCTT
3' ss Score
6.4
Exon sequences
Seq C1 exon
ACAAGTCTTGGATAATCGGTATGGCTTGAAGCGCTGGCAAATAGGAGAAATTGCTTCCAAGATTGGGCAGCTATACTATCATTATTA
Seq A exon
GTAAGTAAATTACACATGGAAAGAGTAAAGTGTTGTCTGATTAAAACACAGCATGCAGAAGTATACATACATAGTATACTCATTGCTAGGCATGAAAATCACGAGTTACAAATGAAACTCTAGTAGTTCGGACCAGATTGATCAAGACAATGTTGTGCAATAACCTTCCATAGTCAAAGTACTATTTGTTTTAAAGGCTTGCCTCCCAAACACTTCATTTGGTCAGACTCATTTATAACTTAAAAATTTGATCTTGGTTTTAGATAAACGATTAATACTAAAGGATTTATTGTTCTTGCAGCTTCACTTGTCTTAATAATGTGTAGCATTGTATTATAACTTGTATATGTGAATGAATGGTTTTCAGAAGGATACTTTAAAAAACTCATACTTGCAGGATATGTTTGAAAGATATTTTTTATTATATCCTTAGAGCACTAACATCTATATAGTCCCATCCCTGAGTTCAGAAAACAAGAAGGGTCCTTTTAGGAATCTAAATGTCATCATCCTGAAGTGATAATCAGGTATACAATAAAAAAGGCTTGGACCATTTGTAATCTAAAAGGCAATAAAATGGCTGGGCGTGGTGGCTCACGCCTGTAATCCTAGGACTTTGGGAGGCCAAGGCAGGTGGATCACCTGAGGTCAGGAGTTTGAGACCAGCCTAGTGAAACCCCGTCTCTACTAAAAAGACAAAAAAATTAGCCAAGTGTGGTGGCAGGTGCCTGTAATCCCAGCTACTTGGGAGGCTGAGGGAGGAAAATTGCTTGAACCTGGGAGGCAGAGGTTGCAGTGAGCCGAGATCATGCCATTGGCACTCCAGCCTGGGCAACAAGAGTGAAACTCTGTCTCAAAAAATAAAAAATTAGAAAAAAGAAAAGAAAAGAAAAGGCAATAAAACTTCTTCCATTTCCTACATTTTGGCATACCGCTCCAAATTCCCACCACTAAAATCACTCTCTTGGGTAGAATATTTTCTTAAAAAGTCCCTTGTAAAACTAGAAGTGTTTTCTCAGGTAGAAATGTTTTCTTAAAAAGTCCCTTGTAAAACATAATTCATTAACATCCCCTGAAGATTCGTATGGATTAGTGCATTCCTCAGTTCTGTGAGGACAGAAATTAAAGAAATGGGCCAAAGGACTGTATGGATTTGAGGAAGTGGCCTAGTCCTGGGAGAGGATTTCACTGGATGGAATGCTGTTTGGAGAGTCCCTTCAAAGAATGAGGATAATGTGTAATATGGGTTGGCATCAAAAAAGGCTTGGATGCAGCGAGGAGGTTTTTAAAAAAATTTCATTATTATTTTTTATACATTTTAAGGGTGATATGATTATTGTCTTGCCGATTCAAATTTAGGACAGTCATTCCCACCCCCGCACCCCGTGCCACAGAGGAATACAGCGGTATATAGAACAAGTATTTACCATGGTGAAGAGTCTCTGACACTGTCATATTTAAAAATATATTTTTTCTCATAG
Seq C2 exon
CTTACGCACATCGGAAACCAGCTATCTGAATGAGGCTTTTTCCTTCTATTCTGCAATCAGACAGAGATCATATTATTCTCAAGTCAATAAAGAGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000173611:ENST00000336505:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF120703=DUF3550=FE(24.8=100)
A:
NA
C2:
PF120703=DUF3550=FE(10.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains