HsaINT0147175 @ hg38
Intron Retention
Gene
ENSG00000174175 | SELP
Description
selectin P [Source:HGNC Symbol;Acc:HGNC:10721]
Coordinates
chr1:169588852-169590202:-
Coord C1 exon
chr1:169590147-169590202
Coord A exon
chr1:169589462-169590146
Coord C2 exon
chr1:169588852-169589461
Length
685 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
CTATAATGCATTTGCTGCAGGTT
3' ss Score
6.69
Exon sequences
Seq C1 exon
CCACCTAGGAACATATGGAGTTTTTACAAACGCTGCATTTGACCCGAGTCCTTAAG
Seq A exon
GTAAGATCCCTATAAAGATATTTTTGAAGGAAATAGAACACTAGGGAAAAATGGAAGACTATAAAGCTTAACTTTTCTTTACATAATCATATATTAAATTTTAAGTATGTATTAAATTTTCAGGCATGAAGGAAATTGTGTTGGCAGTAGGACACAGGTATGACAATGGAGTTACAAAAGAGTTCACAAAAGGATTTTCATTTCCTCCAGGACAGAAATGTCCTAACAAGACATAACTTATTTCAGGATGTGTAACATTTCCATTATTAACTGCTAGGTGGTGATGATGTGGCCTTGCCTGCAAAGCAGAAGTCAGGACTGCTGAAAAATGTTTACGAACTGTTATGGAGTCAATTCCCTATGCTACCTGCTGGAAAAACAAAAATAATCTGATGCTATCCCTCTCCCAAAAAGTGGGTAGTTGAGTGTCCTACAAAAAGCCTGAATGGCAGAATATTCGAAATCTAGAAAGAAAAGATTATGCTGCGCCTCAGGGTGTAGATATGATGAGCAATTTTTTTCTTTCTTTTATTTTTTTAAGGAAATGATAATTATTTAAATTTCTTTGGTCTCATTTCCAGAGACCTGTCCTTTTCCTGGTCTCCTCATTCAGCCTCCATATGATCCTGTTGTGAACATCAAGTTTCCTGCTACACTGGACTTAACTATAATGCATTTGCTGCAG
Seq C2 exon
GTTTCCATAAACACCCATGAATCAAAGACATGGAATTACCTTAGATTAGCTCTGGACCAGCCTGTTGGACCCGCTCTGGACCAACCCTGTTTCCTGAGTTTGGGATTGTGGTACAATCTCAAATTCTCAACCTACCACCCCTTCCTGTCCCACCTCTTCTCTTCCTGTAACACAAGCCACAGAAGCCAGGAGCAAATGTTTCTGCAGTAGTCTCTGTGCTTTGACTCACCTGTTACTTGAAATACCAGTGAACCAAAGAGACTGGAGCATCTGACTCACAAGAAGACCAGACTGTGGAGAAATAAAAATACCTCTTTATTTTTTGATTGAAGGAAGGTTTTCTCCACTTTGTTGGAAAGCAGGTGGCATCTCTAATTGGAAGAAATTCCTGTAGCATCTTCTGGAGTCTCCAGTGGTTGCTGTTGATGAGGCCTCTTGGACCTCTGCTCTGAGGCTTCCAGAGAGTCCTCTGGATGGCACCAGAGGCTGCAGAAGGCCAAGAATCAAGCTAGAAGGCCACATGTCACCGTGGACCTTCCTGCCACCAGTCACTGTCCCTCAAATGACCCAAAGACCAATATTCAAATGCGTAATTAAAAGAATTTTCCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000174175:ENST00000263686:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGAGTTTTTACAAACGCTGCA
R:
TCTCCACAGTCTGGTCTTCTTGT
Band lengths:
342-1027
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development