MmuINT0140969 @ mm10
Intron Retention
Gene
ENSMUSG00000026580 | Selp
Description
selectin, platelet [Source:MGI Symbol;Acc:MGI:98280]
Coordinates
chr1:164148476-164150026:+
Coord C1 exon
chr1:164148476-164148531
Coord A exon
chr1:164148532-164149019
Coord C2 exon
chr1:164149020-164150026
Length
488 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
TTAGTTTGTTTCTTTTTCAGAAA
3' ss Score
9.74
Exon sequences
Seq C1 exon
CCACCTAGGAACATACGGAGTCTTCACTAACGCTGCATATGACCCAACCCCTTAAG
Seq A exon
GTGAGTTCCCTATGAGGACGGCTTTGAAGAAAATAGAACAGTAGGTGAAAAGGCAAGAATACCAGTCTTGAATTTTCTTTATATCATATGTATGGAATTTTAAGCATGTATTAGAATATTAAGCTCTGATATTGGCAACAAGTATGTGTGACTGAGTGGAGACAATAGAATTTATCCTTGGATTTCCATTCCCGCCCAGATGAGAGGTTCTAGCAGTACATAACCTGTTCCAGGATGTTTGAGATCCCACTGATGCCAAGGAAGTGACGTTGACAGTGTGGGCTTGCCTCAAAATCCCCTGTGCTACCTGAGCAGAAACCACCTGAAGTCATCTTTTCAAACAGTACAGGGAAAAGTCCCCTTTCCTGCTGGTAGACAGTGCAGAACCTAGAAAGAGGCAAATGTCTCAGACATCAGAGGGGCCCACGGTGAAAGACTTCTTTATCTTGTAAGGAAGCAGTCCTTTAATTAGTTTGTTTCTTTTTCAG
Seq C2 exon
AAACCCGGTCTGCCAATGTCTCATTCGATTTCTCAGGATTCCACATGCAAGTGTCAAGTTTCCTGTCACACTTGACTGTAACTCCATGGCATTTGGGCATTTGCTGAGGTTCTCTGTAGTTTAAAACAAAAAACAAAACAAAACAAAAAAAAGGACAGGAACCTAGAAAAAGAACTATGCACTTTCCCACCTCTCCACCCACCCCTTCCTGCTCCGCCCCTCACCTTCCTCCAGCTCCGCCCCTTCCTGCTCCGCCCCTCACCTTCCTCCAGCTCCGCCCCTTCCTGCTCCGCCCCTCACCTTCCTCCAGCTCAGCCACAGACCCAGGAGCAAATGTTTCTGCTCTGGTCTGTGGCTTGTTGTTACTTTGCTGTTGCTGAAAACGGGAGAGTCCAAGGCCCTGGAGCATCTTCCTCACCAGGTGACCAGGCTCTGGAAAACCGAAGGTCTTTCTCTTGGGATTGCAGAGTAGCAATGTTGGTGGGCAGGCAGACCTCTAGTTTAAGGGGATGCCTGCTTTAAGATCTCCTGGGTCTTCCATGTTTCATATCAATGAGGTTGTTTACACCTCTGCTGCTGAGACTTTCACAGAAACCTCCAGATGGTACTAGGGGACACAGAAGATCTGGAACAGAGCCAAGACGTCACATCTGACTGCAGACTTTCCCTCCACCAAAGCACCCAAAGATCATTGTTTGGATGTATAAATAACTCAACTTCCCCAAATGTCAAGCTCTTTGTGTTTTGTTCAATAAGTTCTGTGTATAGCACTTTGTCTACCACCAATGTGGTCACAGTTACAACCCTCTAAATGACAGCTGGACCTTCCAGTGAAAGCACAAATGTATGTCGTATATCCCCTGACCACAGAGGAAAAAAACAAAAACAAAAGTCAGAGGAGCAGAAAAAGGTCCTCTTTGCAATTACTGTTCTGCAGGAAAGAACAGATATTGTTTTATATGTAATTTAATGCACATATTTAATAAATAAGTCACTGAAAATTACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026580:ENSMUST00000162746:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACGCTGCATATGACCCAACC
R:
CTGAGCTGGAGGAAGGTGAGG
Band lengths:
343-831
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types