GgaINT0038547 @ galGal3
Intron Retention
Description
NA
Coordinates
chr8:3737267-3737709:+
Coord C1 exon
chr8:3737267-3737323
Coord A exon
chr8:3737324-3737474
Coord C2 exon
chr8:3737475-3737709
Length
151 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAAT
5' ss Score
6.38
3' ss Seq
CTTCTCCCATCTCACTGCAGGCG
3' ss Score
10.76
Exon sequences
Seq C1 exon
TGACCTCGGGGCACCAGGCATCTTCACCAATGCAGCCTACGACTCCACCTTGTAAAG
Seq A exon
GTGAATGCATGTGCAGTGCTTGCGGCACGTTGGAAGCTGTGTGTGCAAAATCCATCCGCTTCTGGGCAGCACGTGGGCTTATCCGGGTGGAAAACTCAGGGAGGGTAAGCCCAGCCACCTCCCTTGTGTCGCTTCTCCCATCTCACTGCAG
Seq C2 exon
GCGAAGCGGACCAGGAACGCTGTCCCCACCACCACCGAGCCCTGACGGTACTTCGCTTTGCCCTGCTGGCCTGAAGCTGAGCCCAGCGGCCCGGACTGCAGAGCTCCGTGCTCACCCCAGCCTATACCCACGCGTGGGCAAGGCCTCTGAAGAGCAGCAGGGGCGTGGAAAAACGGACTGTAGCCCCCTCCCTTCCCCGGCTTGCTGCTGGGGCCGGGCCCGTGCCAACCGGCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002643:ENSGALT00000004163:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACCAGGCATCTTCACCAAT
R:
GAAGGGAGGGGGCTACAGTC
Band lengths:
242-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]