BtaINT0130657 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020755 | SELP
Description
Bos taurus selectin P (granule membrane protein 140kDa, antigen CD62) (SELP), mRNA. [Source:RefSeq mRNA;Acc:NM_174183]
Coordinates
chr16:38049259-38050706:-
Coord C1 exon
chr16:38050651-38050706
Coord A exon
chr16:38049989-38050650
Coord C2 exon
chr16:38049259-38049988
Length
662 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGT
5' ss Score
11
3' ss Seq
ATTCTCGCTGTCATTTTCAGAGA
3' ss Score
9.3
Exon sequences
Seq C1 exon
CCACCTAGGAACATACGGAGTTTTTACAAATGCTGCGTTTGACCCAAGCCCTTAAG
Seq A exon
GTAAGTTGCCTACAGATATATTTTTGAAGGAAACAGACAGTAGGAAAAAGAAGACTATAAAGCTTGCCTTTTCTTTATATAATGAGGAGTTACGCTTTAAGCATATATTAGAGTTCAAACTATGCAGGAAATTGTGTTGGCAGTGGGAGACAGGCACAGCAGAAGAGTACAATAGATGGTGAGCATATAGGAGGATTTCCATTTACTCCAGGATATAAGTGTTCTAATTAGATGTAACTTATTTCAGGATGTATGACATTCCCATTACTGGCTGCTAGATGGTACTCATACTGTAGCCTTGCTTGATCACCAGAAATCATGACAACTAGAAAAATTTTACAAACTTTATGGAGCCAGTTCCCTATGCAACCTGCTGGGAAAACAAAAATAATATGATATTATCATATAATTATCAAAAATAATATGATATTATCATATATTATAATGTTATATTATCATATAATATATATGCCATATATGATAATACCTTCTTTCTTCCAAAAAGCTCAGTGAGTGGTTAAGTTTCCTAAATAGCCTAGATGACAGAATATCTGGAATCTAGAAAAAGATTATACAAAGCCTTAGAGGGTACATATGATGAGAGCTTTCTTTGATATTTTTCAGGAAAATACAATAATTTTAATTCTCGCTGTCATTTTCAG
Seq C2 exon
AGACCTGTCCTTGTCTTGGTGACCTCGTCCAATCCCCACAGGATCCTATTTTTGAACATCAGCTTTCCCGAAAAGACTTGATTATAACTGTTGAGTATTTGCTGCCATTTTCTGTAAATACTTGTGAATAAAGGACATGGAATTTCCTTTAGATTAGTTCTGCACCAGAGCAGACGGACTGGACCACAAGCCCCAATTCTCCACCCACCACCCCTTCCTGCTCCATTTCCTCTTCCTCCAACACAAGCCTCAGAAGCTGGGACTGAGTCTTTCTGCTGTGTTCTGTGGGCTTTGGCCTAGCTGTCACTTGCGGTACTAATTAGCTAGAGTCCAGAGCATCTGACTCACCAGAAGACCAGACTGGAAAAATAAAAATGCCTCTTTATTTTGGGACTGGAGGAGGTTCTCCTCTACTTTGTTGGAAGGCAGGAGGTGTCTCTGACTTGAGGGAATTTCTATAGGATTTCCTGGGTCTTCAGTGCTTGCTGTTGGTGAAGCCTTCTGGACTTCCTTGAAGCTCCAAGAGAGGCCTCTGGATGGCACCAGAGGCTGCAGAGGCCACAGAAGACTGGTGCTCCAGACAGGAAGGTACACGTCATGTAGACCGTCCCTCCGCCGTCACTCTCCCCCAGAGGACCCAGAGACCAATCCTTGAATGTCTAGTTAAAAGGATTCCCTAAATGCCATGTTCTAGTGTTTGATATTTTGCTGAATAAAGTCTGTATCCATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020755:ENSBTAT00000027661:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.056 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAATGCTGCGTTTGACCCAA
R:
GTACCGCAAGTGACAGCTAGG
Band lengths:
346-1008
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development