RnoINT0132783 @ rn6
Intron Retention
Gene
ENSRNOG00000002794 | Selp
Description
selectin P [Source:RGD Symbol;Acc:3656]
Coordinates
chr13:82463101-82464628:+
Coord C1 exon
chr13:82463101-82463156
Coord A exon
chr13:82463157-82463766
Coord C2 exon
chr13:82463767-82464628
Length
610 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
TTAGTTTGTTTCTTTTTCAGAGG
3' ss Score
9.12
Exon sequences
Seq C1 exon
CCACCTAGGAACATATGGAGTCTTCACGAACGCTGCATATGACCCAACCCCTTAAG
Seq A exon
GTGAGTTCCCCATGAGGATAGCTCTGAAGAAAATAGAACAGTAGGTGAGAGGGCAAGAATATCAGTCTTGAATTTTCTTTATATCATATGTATCGGATTTTAAGCATGTATTAAAATGTTAAGCCATGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAACAAGCGCAAGGCCCTGGGTTCGGTCCCCAGCTCCAAAAAAAAAGAAAAGATAAAAAAAAAAAAATCTTAAGCCATGATAAAACCATATTATCGACAAGCACGTGTGACCAAGTGGGGACAATAGAATTTATCCCAGGATTTCCATTCCCGCCCAGAGGAGGGGTTCTAGCAGCATAGAACTTGTTCCAGGGCGTGAGAGATCCCATTGCTGCCAAGGAAGTGATGTTGACAGTGTGGGCTCGCCTCAAACTACCCTGTACTACCCGAACAGAAATCACCCGAAACCATCTTTTCAAGCAGTGTAGTCAAAAGCCCCCTTTCCTGCCAGTACACAGTATAGAACCTAGAAAGAGGCAATTGTCTCGGGCATCGGGGTAAGCGAAGTAAAAGATTTCTTTATTTTTGAAGGAAGCAGTTGTTTAATTAGTTTGTTTCTTTTTCAG
Seq C2 exon
AGGCCTGGCCTCCCGATGTCAATTGGATCTCTCAGGATTCCGCATGCAGATAACAAGTTTCCTGGTCGACTTGACTGTCACTCCCCAGCATTTGCTGCGGTTCTTTGTGGTAAATAATTGGACAGGAACCAAACGAAAGGACGATGTGCTCCGCCCACCCCTTCCTGCTCCGCCCCTCACCTTCCTCGGGCTCAGCCACAGAAACAGGAGCAAATGTTTCTGCTGTGGTCTGTGGCTTGATGTTACTTTGCTGTTACTGAAAACCCGAGTTAGTCCAAGGCACTGGAGCATCTGCCTCACCAGGTGACCAGGCTGTGGAAAACCGGAAGTCTGTCTGCTTTCTCTTGGGATTGAAGAATGGCGATGTTGGTGGGCAGGCAGACCTCTCGTTTAAGGGAACGCCTGCTTTAAGATCTCCTGGGTCTTCCGTGTTTCTTATCTCTGAGGTTGTTTACACCTCTGCTGCTGAGACTTTCAGATGGTACTAGGGGACACAGAAGATCGGGAACAGAGCATGGACACCACATCTGACTGCAGACTTTCCGTCCACCAAAGCACCCAAAGGCCATTGTTTGACTGTAGAGTTCAACTCCCCCAGCTATCAAGCTCTTCACGTTTTGTTCAGTGAGGTCTGTGTATCTCACTTTGTCTACCACCAATGTGGTCACAGTTACACTCCTCCAAATGACAGCTGGACCCTCCAGTGAGCCCACAAATATATGTTGTATGTCGCCTGTCCACAGAGAGAAAAATCAGAGGAGCAGGAAAGGTCCTCTTTTCGTTATTTTGTTCTGCAGGAAAGAACAGTTATGTTTTATACGTAACTTAATTCACATATTTAATAAATAAGTCACTGAAAATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002794:ENSRNOT00000003759:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACGAACGCTGCATATGACC
R:
GTTTTCCACAGCCTGGTCACC
Band lengths:
356-966
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]