HsaINT0147297 @ hg38
Intron Retention
Gene
ENSG00000001617 | SEMA3F
Description
semaphorin 3F [Source:HGNC Symbol;Acc:HGNC:10728]
Coordinates
chr3:50174231-50175188:+
Coord C1 exon
chr3:50174231-50174350
Coord A exon
chr3:50174351-50175095
Coord C2 exon
chr3:50175096-50175188
Length
745 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
3' ss Seq
CCTGTTCCTCGTCTTCTCAGGCC
3' ss Score
10.56
Exon sequences
Seq C1 exon
GGCGAGTGTGGGAACTTCGTCAGGCTCATCCAGCCCTGGAACCGAACACACCTGTATGTGTGCGGGACAGGTGCCTACAACCCCATGTGCACCTATGTGAACCGCGGACGCCGCGCCCAG
Seq A exon
GTAAGCCCCAGCCACCCTGGCCCTGTGCTGCCCCCGCTGGTGGCTGCATCCCAGGGTCCTGATGGGAGGAGGGGCTTCAGCCCCAGCCCTGCCACTTCCGAGCCTTTTGACCTTGGGTGAGTGACTTCTTTCACCTCGCTGAGCCTCAGTTTCTTCACTTGAAAATGGGGCTAACCGCTGCCTTTCTCACAGGTCGGTGTGAGGAGGAGGCAGTGAGCTAAAGCTCCCAAAGCTCCTAGCACTGTGCCTGGCACATAGTAAGCACTTGCTCCATATGTGGCAACAGCTCTCTTGGCTATGCCTGTGGACCGTGCCCCGACGGCCGAGCCAGAGGGCCTGGTGGGGGCCTTGCAATAGGAGGCTGGACCCCTGGGTCAGCTTCTACCATGTGGCCTGGGGGAGAGCTGCCTTCCACCCCCAGGGCCAGGGTTGTGGGGAGCTGCCCCTTCCCCAGCTCTGCCCCTTCCTGCCTGCTTCCACCCTTTTCCATTTCCATGTGGGCATGTGTGTGAGCTGGCGTGAACTTGTAGGGCATGTGTGAGAATGACTGGATCTGAGGGGCACCTGTGTGTGCAGGTGTGTGCCAAGCCTGTGTGTATGTATGTACACACGCATAGACGTGCTCTGGGGGGCCCACGTGTTCACGTGTGTTCCTGGCCTGTGTGGTGTTAGAGGCTGGCAGCCCGAGCCCGCTCCCCCAGCCCCTGCCACCCCCAGCTCTAACCCCTGTTCCTCGTCTTCTCAG
Seq C2 exon
GCCACACCATGGACCCAGACTCAGGCGGTCAGAGGCCGCGGCAGCAGAGCCACGGATGGTGCCCTCCGCCCGATGCCCACAGCCCCACGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000001617:ENST00000002829:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.710
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(18.8=100)
A:
NA
C2:
PF0140314=Sema=FE(6.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development