HsaINT0147341 @ hg19
Intron Retention
Gene
ENSG00000185033 | SEMA4B
Description
sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B [Source:HGNC Symbol;Acc:10730]
Coordinates
chr15:90760999-90763123:+
Coord C1 exon
chr15:90760999-90761061
Coord A exon
chr15:90761062-90763024
Coord C2 exon
chr15:90763025-90763123
Length
1963 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
CCCTCGCTCCTTCCCCCCAGCGC
3' ss Score
10.8
Exon sequences
Seq C1 exon
CTGCTTTGGGGTGCAGACGCAGAGAAGAAACAGCAGTGCAGCTTCAAGGGCAAGGACCCACAG
Seq A exon
GTGAGCCCACACCTGGAAGGGAGCTGAGCTGCAGGAGGGATGGAGGGTGGTGGACTTCCATCCAGGCCAGAGGCGGGAGGTGGGAGCAGATACAGCCAGGTATGGTGGGAAGGGCATAAGCTTCTGAGATTACCCGGCCTGGGTTTGAATCCCAGCACTACACTTACATCGCTACGACCTTCGACAAGTAGATTCACCTGTCTAAGCCTTAGTGGGCCCACCTGTAAAATGGGGATAATGATCCGGTCTCACTGGGCTTACAGTGAGGATTCAGGAAGCTAATAGGTGTAAGGCACCTGGCTCATAGATACAAGACCTAACAAGTCAGCTTCCAGCGTGAACAGAGATTGGGTGGGGTGAGAGTTGTGTCCCTCTGCAGATGGTTCCTGATGTAGCACATCTGACAGATTCTGGTGTGGTTTTGGCCAAAGCACAGGATGAAATCTGGTTCAACCCAGGTTCTCCTGGAGGACTCATCATCATCCCTAGAGGCCTCCTGCTCCTGCTCCTAAGTGCAGCAGGTGCTGGGTAAGGTGAGGGCAAACGAGTGCTGGACTTGGGATCAAGACACAGGTTCAAGTCCTGGCTGCCATTCTGTTATTCAGCTAACATTGATGAAGCATGCACTCTGTGTCCATGTACTTTTAGGTACTGGAGATTTAATTGTGAAAAAGCAGGCTTGGCACAGTGGCTCACGCCTGTAATCCCAGCACTTCGGGAGGCTGAGGCAGGTGGATCACAAGGTCTCCACCTCATGGTCTCCTGAGTGTCTCAGGAGTTCGAGACCAGCCAGGCCAACATAGTGAAACTCCGTCTCTACTAAAAATACAAAAAACATTAGCCAGGCATGGTGGCAGGCGCCTGTAGCCCCAGCTACCTGGGAGGCTGAAGCAGGAGAATCGCTTGAACCTGGGAGGCAGAGGTTGCAGTGAGCCGAGATCTCGCCACTGCACTCCAGCCTGGATGACAGAATGAGACTGTGTTTCAAAAGAAAAAGTAGTCAGTTTACAAATGTTATTGGCGGGGCGTGGGATGGAATGAGGTGGTCAGGTAACATTTCATTAAAAAAGTGACATTTGAGCCAAGATCAGGAGAGAGTGAGGAGCTGACAGTGGCATATCTGGAGGAGGGGCAGGACTTTTGATTTCACTCTGAGGGAGGTATTTGGGAGGCCAGGGGAAGGCTGAGCAGAGATGTGACATGGTCTCACCTGTGTACTAAGAGGGTCACTCTGGCTACTGTGGTAGAGAAGCCTCCATGGGGAAGGACAGGAGGAGGGAGAGCAGTGAGGGGCGAGTGATGATGGTGGCTCGGACCAGTGAGAAATGCTCAGATTCCGGATGCATTTTGAAGATGGAGCCACCAGGATTTCTGGGTGGGAAATTATGGGGTATGACCGACAAGAAGAGTCAAGGCTGACTGGGTTTGGGGCCTCAGCGACTGAAAAGACAGAATTAATGAAAGTGGCAAGATCTCGGGGGGAAGCATGTGTTTTAGGGAGGACCAGAAAGAAGCTTGGTTGCAGGTGCCAGTTAGATACCCCATTTGAAGGTGATGCATGAATCTGGGGTTCAGGGTTCAGGGCTGAGCAGTCCTCCTGCTCTGGGCTGTGGCTTCATCAGCTCCCAGCTTGGTTGGGAGGGGCCTGTGGCTTCTGAAGAGGATGCTGCTGGGGAATAGTACAACTCAAAGGGGTAGGATTCTGTGCCCTCACCCCTAGGCCGAAGGAAAGTTTGCCAGTCACAAAACTAGCTGAGCCCCTGGGCTCCCTGCAGCACACACACTCTGTGCACGCTCCACTGTGCCCCAGAAAACCCGTGGGTTCTTTGTTCCTAGACTTGAGTGCCCCATCCCCAGTCCTGGGAGCAGAGGCCGGGCCTGGGTGTGGAAGGGGGGGCTCGGCGGTGCCCCCTGGTGGCATGCTTGGGCGTGGGACTGATATCCCCTCGCTCCTTCCCCCCAG
Seq C2 exon
CGCGACTGTCAAAACTACATCAAGATCCTCCTGCCGCTCAGCGGCAGTCACCTGTTCACCTGTGGCACAGCAGCCTTCAGCCCCATGTGTACCTACATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000185033-SEMA4B:NM_020210:4
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.048 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=PD(25.0=86.7)
A:
NA
C2:
PF0140314=Sema=FE(32.0=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)