HsaINT0147341 @ hg38
Intron Retention
Gene
ENSG00000185033 | SEMA4B
Description
semaphorin 4B [Source:HGNC Symbol;Acc:HGNC:10730]
Coordinates
chr15:90217767-90219891:+
Coord C1 exon
chr15:90217767-90217829
Coord A exon
chr15:90217830-90219792
Coord C2 exon
chr15:90219793-90219891
Length
1963 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
CCCTCGCTCCTTCCCCCCAGCGC
3' ss Score
10.8
Exon sequences
Seq C1 exon
CTGCTTTGGGGTGCAGACGCAGAGAAGAAACAGCAGTGCAGCTTCAAGGGCAAGGACCCACAG
Seq A exon
GTGAGCCCACACCTGGAAGGGAGCTGAGCTGCAGGAGGGATGGAGGGTGGTGGACTTCCATCCAGGCCAGAGGCGGGAGGTGGGAGCAGATACAGCCAGGTATGGTGGGAAGGGCATAAGCTTCTGAGATTACCCGGCCTGGGTTTGAATCCCAGCACTACACTTACATCGCTACGACCTTCGACAAGTAGATTCACCTGTCTAAGCCTTAGTGGGCCCACCTGTAAAATGGGGATAATGATCCGGTCTCACTGGGCTTACAGTGAGGATTCAGGAAGCTAATAGGTGTAAGGCACCTGGCTCATAGATACAAGACCTAACAAGTCAGCTTCCAGCGTGAACAGAGATTGGGTGGGGTGAGAGTTGTGTCCCTCTGCAGATGGTTCCTGATGTAGCACATCTGACAGATTCTGGTGTGGTTTTGGCCAAAGCACAGGATGAAATCTGGTTCAACCCAGGTTCTCCTGGAGGACTCATCATCATCCCTAGAGGCCTCCTGCTCCTGCTCCTAAGTGCAGCAGGTGCTGGGTAAGGTGAGGGCAAACGAGTGCTGGACTTGGGATCAAGACACAGGTTCAAGTCCTGGCTGCCATTCTGTTATTCAGCTAACATTGATGAAGCATGCACTCTGTGTCCATGTACTTTTAGGTACTGGAGATTTAATTGTGAAAAAGCAGGCTTGGCACAGTGGCTCACGCCTGTAATCCCAGCACTTCGGGAGGCTGAGGCAGGTGGATCACAAGGTCTCCACCTCATGGTCTCCTGAGTGTCTCAGGAGTTCGAGACCAGCCAGGCCAACATAGTGAAACTCCGTCTCTACTAAAAATACAAAAAACATTAGCCAGGCATGGTGGCAGGCGCCTGTAGCCCCAGCTACCTGGGAGGCTGAAGCAGGAGAATCGCTTGAACCTGGGAGGCAGAGGTTGCAGTGAGCCGAGATCTCGCCACTGCACTCCAGCCTGGATGACAGAATGAGACTGTGTTTCAAAAGAAAAAGTAGTCAGTTTACAAATGTTATTGGCGGGGCGTGGGATGGAATGAGGTGGTCAGGTAACATTTCATTAAAAAAGTGACATTTGAGCCAAGATCAGGAGAGAGTGAGGAGCTGACAGTGGCATATCTGGAGGAGGGGCAGGACTTTTGATTTCACTCTGAGGGAGGTATTTGGGAGGCCAGGGGAAGGCTGAGCAGAGATGTGACATGGTCTCACCTGTGTACTAAGAGGGTCACTCTGGCTACTGTGGTAGAGAAGCCTCCATGGGGAAGGACAGGAGGAGGGAGAGCAGTGAGGGGCGAGTGATGATGGTGGCTCGGACCAGTGAGAAATGCTCAGATTCCGGATGCATTTTGAAGATGGAGCCACCAGGATTTCTGGGTGGGAAATTATGGGGTATGACCGACAAGAAGAGTCAAGGCTGACTGGGTTTGGGGCCTCAGCGACTGAAAAGACAGAATTAATGAAAGTGGCAAGATCTCGGGGGGAAGCATGTGTTTTAGGGAGGACCAGAAAGAAGCTTGGTTGCAGGTGCCAGTTAGATACCCCATTTGAAGGTGATGCATGAATCTGGGGTTCAGGGTTCAGGGCTGAGCAGTCCTCCTGCTCTGGGCTGTGGCTTCATCAGCTCCCAGCTTGGTTGGGAGGGGCCTGTGGCTTCTGAAGAGGATGCTGCTGGGGAATAGTACAACTCAAAGGGGTAGGATTCTGTGCCCTCACCCCTAGGCCGAAGGAAAGTTTGCCAGTCACAAAACTAGCTGAGCCCCTGGGCTCCCTGCAGCACACACACTCTGTGCACGCTCCACTGTGCCCCAGAAAACCCGTGGGTTCTTTGTTCCTAGACTTGAGTGCCCCATCCCCAGTCCTGGGAGCAGAGGCCGGGCCTGGGTGTGGAAGGGGGGGCTCGGCGGTGCCCCCTGGTGGCATGCTTGGGCGTGGGACTGATATCCCCTCGCTCCTTCCCCCCAG
Seq C2 exon
CGCGACTGTCAAAACTACATCAAGATCCTCCTGCCGCTCAGCGGCAGTCACCTGTTCACCTGTGGCACAGCAGCCTTCAGCCCCATGTGTACCTACATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000185033:ENST00000411539:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.338 A=NA C2=0.130
Domain overlap (PFAM):
C1:
PF0140314=Sema=PD(25.0=86.7)
A:
NA
C2:
PF0140314=Sema=FE(7.3=100)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development