RnoINT0132935 @ rn6
Intron Retention
Gene
ENSRNOG00000025167 | Sema4b
Description
semaphorin 4B [Source:RGD Symbol;Acc:1307872]
Coordinates
chr1:142001062-142003631:+
Coord C1 exon
chr1:142001062-142001124
Coord A exon
chr1:142001125-142003532
Coord C2 exon
chr1:142003533-142003631
Length
2408 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
CATGCTCTCCTTCCCCACAGCGT
3' ss Score
12.58
Exon sequences
Seq C1 exon
CTGCTGTGGAGTGCAGATCCTGACAGGAAGCAGCAGTGCAGCTTCAAGGGCAAGGACCCAAAG
Seq A exon
GTGAGACCTGGGCAGAACACTGAGCAGATATGGCTGTATGGGAAAGGCATGGCCTGGACATACCCAGCACTAGGCTTGAGACCCAGCCCCAGCCCTGTATGATGTTGGATAGATTCTTCTGGCTGAGCCTTGCTGTTCTCACCTGTACGATGGGATAATATGACTGCAACCCTGGATAAACCTGGCCCCTAACACTTAAAACAGTGTCCCATTAGTCTTAGTCCAATATGACCTGGCGAGGTGGTGATTATGTCTTTGTCAAGGGTCTCTAGTTGACAGCCAAGTCTGGCAGATTCTAGTTTGGTCCAGTCCAATCCAGCATTCTCCTGTAGGACTTGCGGCTATTCCCAGAGGTCTTCAGGTTAAGTTCTGGATGTCCCCATCCACTCACACTTACTTCTGTGAACAGTCAACAAGTGCATGTTGGTGGTGTGGGGTGGAACACTGTGCCTCCCACAGGCTGGACGAGCGCTCTGGTGGTGAGCCACACCTCAGCCCCTCTTCAGCACTTGGTCTGTGCTGTTAGCTACTAGAGACATTATGAAAGAGTAAAACCATGCCTGTAATCTCAGAACCTGGACCGGAGGGTTAGAAGTTCAAGATCATCCTGGACTACATAGCAGATTGATGGACTGAACACCATGACACCATTTCAAAGAGCTAAAAAAATTGAAAGAAAAACTAATGAAAAATCAGTTTGTACGGTGGTTATGACAAAAAGGAAAAACCAGGGCTGGAGAACTGGTTCAGCAGTCATGAGTACAGACTGCTCTTCTAGAGGACCGGCCTGTTCCACACGACACCTCATAACCTTCTGTAACTCCAGTCCCCAGGGACACAATTCCCTCTTCTGGCCCCCGTGTGTGGGCACCTGACACACAATGAGATCCACACTCAGGCACATAAACAAGAAAGCAAAGCTGTGGTGGCCGCACCTTTAATCCCAGTACTCTAGAGGCAGAGGCAGGTGGATCTCTGTGAGTTCAAGGCCAACCTGGTGTACAGAGTGAGTTCCAGGACAGCAAAAACTACCTAGAAAAACCCTGTCTTAAAAAAAAAAAAGACTGGGGGCTGGAGAGATGGCTCAGCGGTTAAGAGCACCGACTGCTCTTCCAGAGGTCATGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCATCTGTAAAGAGACCTGATGCCCTCTTCTGGTGTATCTGAAGACAGCGACAGTGTACTTATATATAATAAATGAATAAATCTTAAAAAAAAAACCAAAACAGACAGACATTTATATAGTGCAAAGACTAGAGGAAGGTAAGGTATGTGACTGTGAGATACCCAGACACTAAGCAGGACTTAGGTTTCACTCTGCGTGAATGAATCATTTTGGAAACCAGTAGAAAGGTGAGCAGAGAAGTGGCATGGGTGTCTGTTTTTGCATTGTTTTACAGAACTCCAGATTAAGCCCAGGGCCTCACATGTGTTAGATAAGTGCTCTACCACGGAGCTACATCCCCGACCCTCTTTCTGAGAGGCAGGTTCTCACTTTGTCACCTAAACTGGCTTTTTCACCCAGGCTGGACTTGAACTTGTGATCCTCTTCTCTCAGCCTTCTGAGTAGGTAGAATTATAGACTTGTGCCACCAGACCTATCCTGCCTGTGTTCTAAAAAGATGGCTTTGAGCCAGCCATGTTTGTGCCTCCTTGTAATTCTAGCACTTGTAAGGCAGAGGATTATTAATTCCTGTCAAGCCTGGGCTATGTGGTGAAACTCATAAATAAAAACAGACAAATGGGTCCCGTTGTGTCCATGATAGTGTCTTCTCTGGAATTGAACACAAGGAAGCCATCGTGGGTCAGGCCATGATAGTGCCTTTTGCAGGGTGCTATCCATAAAGGGGTGAAAAATTATCAGATTCTGGGTTTTTGTTTATTGAAGGTTTAGCATCCAGGAAGGTGTGGAATTTGAGAGACAGCCAGGCCATAGCCTCCCACTGGAATGATGGAAAGACTTCAGTGGGCCTTGGGGTGTTGGCGGTACCAATTTGGAAATTTCCTATGAGATACCTTGTAGAGGTGGCATTTGTGCCAGGAGTTCAGGGCTGAGCAGTTCTTCTGCTTTACCTCCTGTCTCCCCCAGGGTTGGAGAATCCTCTCAAGAGGATTAAGACACTCTGAAAGGTGGAATTCCTCCCTCTGGGGTGCCTTTCACCACAGAGAAGAACATTAGCCAATCCAGAAACTAGCTGAGCCCCAGTGCAGACCCTGCTTAAGCTCTGCCAGCCAACCTCTGGCCTAGAGCCTGGTCCATTGTTCTGTTACTCACCAGGTCCCCAGTGAAGGCTTGGTTTTGGGTCTGGGGTGGAGGCCTCTGCTTTGCCCCCTGGTGGCATATGTGGACCTGACATGCTCTCCTTCCCCACAG
Seq C2 exon
CGTGACTGTCAAAACTACATCAAGATCCTTCTGCCCCTCAACAGCAGCCATCTGCTCACCTGTGGCACCGCAGCCTTCAGCCCCCTGTGTGCTTACATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025167:ENSRNOT00000030914:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.190 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(4.6=100)
A:
NA
C2:
PF0140314=Sema=FE(7.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]