HsaINT0148234 @ hg19
Intron Retention
Gene
ENSG00000119335 | SET
Description
SET nuclear oncogene [Source:HGNC Symbol;Acc:10760]
Coordinates
chr9:131451509-131453506:+
Coord C1 exon
chr9:131451509-131451934
Coord A exon
chr9:131451935-131453448
Coord C2 exon
chr9:131453449-131453506
Length
1514 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
TTTTTGCTCCTTTTTTGCAGAAA
3' ss Score
10.53
Exon sequences
Seq C1 exon
GTAGGAGGAGGTGGAGGAGGAGGCGGCTCGGGAGAGCGAGCAGCGAGCTGGCTGGATCGCCGAGCGCGAGTGAGGGAGCCGAGCCGCCCGCCGCCGCCGCCTCCGCCTCCCCTCCGCGAACAGGAGCCCGGGCCGGGGCCCGGCACGCCGCCCCAGCCCGTCCCTCGGCGTCAGGCCGCGAGGGTAGCGCGCGCGAGCGAGCGAGGGGGAGGGAGAGCGAGCGAGCGCCGGGAGGAGGCGGCCGGACCGAGCGGGCGCCCGCGCGTGTGGCGTGAGGGGAAGCCGCTTGCCCGCCCCCTTCGCCTTCCCTTCTCTCCCCCTCCCCGCTCCCCCCCCGACCGCGGAGCAGCACCATGTCGGCGCCGGCGGCCAAAGTCAGTAAAAAGGAGCTCAACTCCAACCACGACGGGGCCGACGAGACCTCAG
Seq A exon
GTGAGAGCAGCGAGCCCGGGGGCCGGCCCGCGCCGCCATCTTCGCCGCCCGCCCCGGCCCGCAGGCCGCCGGCGGGGCCCGGGGCGCGCGCGGGGGGCGCCGGGCGGGGGGGCGCGGCGCGGCCGGGCGGGGGCCCGCGGACTCGGCGCCCTTTTTTGTGCGCGGCTGGGCTGGGGGCCTGGGTGGCCCGCGCCGCGGCGGCCGCGCTGCGAGGCGGGGGCGCTGCGGCCTGCTCGGCGCGGGCGGAGGAGACCCCCCCTTCCTCTCCCCCCTCCCTCGCTCTCCTCCCCCTCCCTCCCTCCCGAGAAGCCTCTCTTTATTGTGCTCCGCCATGATGCCTCGCTCCCATCAGCCGCCGCCGCCGCCACATGGTGCGGCCGGACGCGGCCCCGCGCCCGACCTCCCGCGCGGTTCCGCTTCGCGCCCGGCCCGCGGCGGCGCCCCCGGCACCCCCGCCCAGAGGCTGGCCCCGGCGGGGCTTCTGCCTGGAGCTCGGGTGGGGTGGGGGCGCGGGGAACACGCGGGCGGCCGCGCGCTGGGCCTTGGCCGGCCGGGAGGATGCTCTGGCCAGCCCGGGCGCACTCCCCACGTGGGGCGGCCGCCCCGTCGCGCCAGCGTGCGGAGAAACCTGGCGCCGCGACCAGTGTATCGGGGGTCTTGGAAATGGCTAAGAAAGCTGGCCTCTGCCTAGGAGGCTCTCGGCAGGGGGGCTGCCAATCCGGGATGGTTACCGGAAATGAACCGCGCGATCTGGCCCTTTCACACCCACTTAGCTTTGTAGGGGGTTTGTAGTCTTTACAGGACAAAAGGGCACCTATTCCAGAGCACACCCCCTTTTCTTCCTCTCCCTTCTGTGCCTCACTGCTTTCCGATCTCATAGTTGCTCCCAGTAAGTGCTCCAAAGTCGTGTGGGGCCGCATCTGAGGTCTGCCCGCCTGAATTGGGTTGGAGGGGTTCATGTTCTGAGAAGGCGAAGGCCAGGGTGTAGGATGGTGCCCCGTGACTTTCCAGTCTTTGTAGGCGTGCCTGGTATCTTCATCGTAATAGCAGAGTCGTCAACTTTCTATGAAAGGTGGTTTTACCTTGATAGGTGGTAGTGGTGGCCTAATTTGTATCATTGTCATGGGTTTAGTTTCCATATTCTAGTTAGCAGCTGCTACTGTTCTCTTGCAAGTGTATAATGTGAAATAATAAACGTGAAGACTTCTGAATAAGGTTATTCTGTGTCTTTCATAGTAGAAACCTTAATGATCGGTCTGTTGTAGTGAAACTCTTTAAAAAGGCGCTATAGAAAACCAATTTCTGAGTAAACCAGCAGACAGCATGACTTGTAAATGGTCTTTTAATTAATTAAAAAGAAATTAGTCAGCTACAAGCATGAACATGTGGAACGCTTGCCTTTGTACTAGGCGTTTTTGTTTTTGTTTTAATGGCTTTTGGAATATTATAGTATTAACATCTGGAAAACTAGGTAAATTTATCTTAGAATTAAGTTTTTTGCTCCTTTTTTGCAG
Seq C2 exon
AAAAAGAACAGCAAGAAGCGATTGAACACATTGATGAAGTACAAAATGAAATAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000119335-SET:NM_003011:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.680
Domain overlap (PFAM):
C1:
PF073527=Phage_Mu_Gam=PU(1.5=4.0),PF060057=DUF904=PU(2.4=8.0)
A:
NA
C2:
PF053086=Mito_fiss_reg=FE(16.5=100),PF073527=Phage_Mu_Gam=PU(28.8=95.0),PF060057=DUF904=FE(23.5=100),PF0095613=NAP=PU(7.7=75.0),PF116293=Mst1_SARAH=PU(29.7=55.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCTCCGCGAACAGGAG
R:
TGTGTTCAATCGCTTCTTGCTG
Band lengths:
348-1862
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)