HsaINT0148704 @ hg19
Intron Retention
Gene
ENSG00000156304 | SFRS15
Description
SR-related CTD-associated factor 4 [Source:HGNC Symbol;Acc:19304]
Coordinates
chr21:33063110-33064243:-
Coord C1 exon
chr21:33064130-33064243
Coord A exon
chr21:33063267-33064129
Coord C2 exon
chr21:33063110-33063266
Length
863 bp
Sequences
Splice sites
5' ss Seq
AAGGTACAG
5' ss Score
8.04
3' ss Seq
TTTCACTAATGGTGAAATAGATT
3' ss Score
2.82
Exon sequences
Seq C1 exon
ATGATTCCTCCCAGGGGTTGTGCCTATATTGTTATGGTTCATAGGCAAGATGCCTATCGTGCCCTGCAGAAACTGAGCCGAGGAAACTATAAAGTGAACCAGAAATCCATAAAG
Seq A exon
GTACAGTCTTACATGTTATAATTAATTTTTTTTTTAAATAGGCAGAAGGGGAAAAATATGTGGCATATAAAAACTAATTTGGGTCTTCGAAATGACTTTCAACACTGAGGCATTTCATGTGCATCTTTTTTTTTTTTTTTTTTTAAAGAATATTTCCTAAAAGAACTCCAGTGTTTCAGCATAAAATTGTAAATGTTACGTGCATGGTAGAATTTGTTTTGTTTTGTTTTTCCTAAATGTAGATGGGTTCATCATGGTAAATTAGTGCTTTAAATATAATGTCTTTTAGCAATATGTTTTGTCCTGTTCAAAAAATTTGGATACTGTATTTTTAAAGTTTGCCATCTTAGAATTAACTGAAAAATATTCACCAAAGGTGGAGAAAAACATATAGGTATATGGGTATTTTTCCCCTAAGGAGCTAAAGTCAGTGTTTCTTCAGTGTCTTAACACCCCATTCTACCGCTGGATTGCACTGCAAAAAGATTTTGTCTGATGTTAAGTAATTACAAGGCACCCCTAGACTTGGAAAAGTAGTCCCCAGTATACTACTAGGCTATTCAGGGAACTTCAGCCTTTCCCTGTTAAACTTTTTCCTTTTCTCTAAGTTTTATGTTGGCTGGGTTGGGTGAGAGTTGGTAAGGAGAAGATGCCAGTGAAATTTCCATCCTAGGACAAAGTGAGAATTAAAGGGTAACCAGTTCTGTAGTGAGAATAAGGCTTTGAATGAGATCCAAGCCTAGCTGGTCCAGATTGCTCCCTTGGTGCCCGAGTCGGAATGGATAGAATGATAGAGAATAATACCCTCAAGACTTACGACCTTGCTTTGTTTTCTTTTTATATTTTCACTAATGGTGAAATAG
Seq C2 exon
ATTGCCTGGGCCTTAAACAAAGGAATAAAGGCAGATTATAAGCAGTATTGGGATGTAGAACTTGGTGTTACTTATATTCCATGGGACAAAGTCAAGCCTGAGGAACTGGAGAGTTTTTGTGAAGGAGGAATGTTGGACAGTGACACACTTAACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000156304-SFRS15:NM_001145444:13
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.226
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=FE(55.2=100)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGATTCCTCCCAGGGGTTGT
R:
TGGGTTAAGTGTGTCACTGTCC
Band lengths:
270-1133
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)