MmuINT0152671 @ mm9
Intron Retention
Gene
NA
Description
NA
Coordinates
chr16:90245626-90247528:-
Coord C1 exon
chr16:90247415-90247528
Coord A exon
chr16:90245783-90247414
Coord C2 exon
chr16:90245626-90245782
Length
1632 bp
Sequences
Splice sites
5' ss Seq
AAGGTACAT
5' ss Score
7.87
3' ss Seq
TGTATTTCCACCAACTGTAGATT
3' ss Score
6.6
Exon sequences
Seq C1 exon
ATGATTCCTCCCAGGGGCTGTGCCTACATCGTCATGGTTCATAGACAAGATGCATACCGTGCCCTGCAGAAACTGAGCCGAGGAAACTACAAGGTGAACCAGAAATCCATAAAG
Seq A exon
GTACATTTTATCATTTACAAAAGGGTTTGATATGTAAATATACTGTTGTGGGGGGTTTTCTTTTCAACGATAATTTTACTGCTTGGGAATGGCTTAAGACATAAAAGCTACCCTGTAAAAATACGGTAACAACAATAACAAAGCAAAACGTTATTAGTTGACATAAAATTTTATGTAACAATTTTCTCAGGGTATTTATTTATTTATTTTATTTATATGAGTACACTGTAACTGTCTTCAGACATACCAGAAGAGGGCATCAGATCCCATTACAGATGGTTGTGAGCCACCATGTGCTTGCTGGGATTTGAACTCAGGACTTCTGGAAGAGCAGTCAGTCTCTTAACTTCTGAGCCATCTCTCCAGCTCTTCCAGATCCCACCTCCCTCCCTGACTCTCCATGCCCCTTCATCCCACCCCCCAACCCCCCACCTGGGACTGGAAAACAAGCAATAAAAGAGAGCAGAAAAGCACAGAAAACACCACACCCTCCTCAAAATCAGAAACCAAAACACACAAGCAAAAAGTCAGAGACAAAAATGCCCAAAGCAGCTGGAGAAAAAAGTCTACCCCCACCCCCAACAAAGAATTTGTTGAGTTGTCCGTGCACTACTGGGCATGGGCCTGCTCTGAGGGAAATAAATGCAGGGAAAACTAATTGGGAAAAACTCATGTTTCCTTGGCAAGCAGATGTCAGTTTCAGGAACCTCTTGGTTAGAGGTGGGAGCCTGAGCTGGCTTCTCCATTTCCGAGCTGGTACCTTATCTGGCTTGATCCGAGGCAGGACCTGTAGAAGCTGTCTCTGATTTTTGTTTTGTTTTGTTTTCGAGACAGGGTTTCTCTGTATAGTCTTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGACTCAAACTCAGAAATCCGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGCGCCACCACGCCCGGCTCCTCCCCACCCCCTTCTCTGATTTCATAGGTGCATCAGTACAATTGGAGTTACCCAGGCCCTTTGCACATAAGTTCCTGAACCCTGTGGGGAGGGTTTAAAGAAGGCAGCCCATTTAGGATGTTGGGTCTCTGTTATTTCCAATCACTTGCAGTGCCACATCTGTCTAGCTCTAATTGGTGCTTTAAAGATGTTTTCTAGTCAAATATTCTTGTATAAAAATGTGGATATTCCACAACCTAAGGTTTACCACTCCATCTTAGAATTAACTGTGAAAACAAAATCAGCAAAGGTAAAGAAAATTAGAAGTGCACCCTCTTAAAATTAGACAGCCACCCTCTGAGGAGTCGGGATTCGGTGCTGTTGTAGTTACTGCCCGGTTCTACTCTAATGTGGACTGGAAAAGGATGTTGCCCTCTCTGTAAAGTGGTCTTCAGTGTGCGGGCCTTCTCCTTGGTGAGCTCATTCCCTCTGCTGTGTGACTGCGTGACTGTGGGGAGGCAGAGTGGGAAGACAGCAGAGGCCTTACTCTGATCAGTGAGTACCTCAAGTGTGCAGGTCCAGCCAGGCCGTGCTGCTCCGCTGCCCTGTCCAGAGGAGTAGTGCTGGGGAGTGGGGAACTGAAGGTTCATGACCTTCCCCTTTCTATTGTGTATTTCCACCAACTGTAG
Seq C2 exon
ATTGCCTGGGCCTTGAACAAAGGAATAAAGGCGGATTATAAACAGTATTGGGATGTTGAACTTGGTGTCACTTACATTCCGTGGGACAAAGTCAAAGCTGAGGAGCTGGAGAGTTTCTGTGAAGGAGGCATGCTGGACAGTGACACACTTAACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
-Srsf15:NM_178923:14
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGATTCCTCCCAGGGGCTG
R:
TGGGTTAAGTGTGTCACTGTCC
Band lengths:
270-1902
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: