HsaINT0149197 @ hg38
Intron Retention
Gene
ENSG00000095370 | SH2D3C
Description
SH2 domain containing 3C [Source:HGNC Symbol;Acc:HGNC:16884]
Coordinates
chr9:127744564-127751300:-
Coord C1 exon
chr9:127751172-127751300
Coord A exon
chr9:127745100-127751171
Coord C2 exon
chr9:127744564-127745099
Length
6072 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
CTCTCTCTACCTTTCTGCAGTAA
3' ss Score
8.32
Exon sequences
Seq C1 exon
TTCTCCAAGGAGAAGTACATCCTGGACTCATCGCCAGAGAAACTCCACAAGGAATTGGAGGAGGAGCTCAAACTCAGCAGCACGGATCTCCGCAGCCATGCCTGGTACCATGGCCGCATCCCCCGAGAG
Seq A exon
GTGAGTAGGCCCCGAGCTGGACTTCAACCCGGGACCCTCCCACCCACTGCCTTGGCCAGCCCCAGCCCTGGCTGCAGCCACCTGGGAGGCTCTGACCTGTTGCTTGGTGGATTCAATCAGAATGGACTGGGATGAGGTCTAGCTCTGCCCTTTACTGACTGTGTGACCTTGAACAAGTTGCTTCACCTCTCCGAGCCTCAGTATCTACTGCAAAGGGGTGTTGTGAAAATTAAACGAAATAATGCAGGTAAAATGTTTAACATGATGCTTGACACCATGAATGTTGGCCTTTGTTCTTATTATTATGCTGTTATTGTTACTGGTCTACATATCTGCCTTTTGTATGTTTGCTTAGTGAGTACCAATCTTTGGGCTACTTAGTTTTGGCAAAGTTGAGTTTCTTGGCTGAGGTGACTTTATAAGCCACAGAATTAAGTTGATAGATCACTTGTTCCTTCTTTCATTTATGCTATGATCTTTGCCAAACACCAACTCTGCCAGGACCTGTGCTAAGCACCAAGGGTGCAGAGGTAGAAAAGGTGGTGGCTTCTCTTGATGGCTAATGGCCCAGGGTGGGGGACTGACAGGCAGGATGACAGTCAGAGCCTAGTGGAAGAAGTACAAGAATAGAGTGCCTGGTAAGAATATGGGCGAGTCCCGAGGAGGGGACACTGAGGATGGAAGCCTTTGTGAGGTGGATAGGAGTTCACCAGGTGGGGCCAGGTGCGATGGCTCATGCCTGTAATCTCACCACTTTGGGAGGCTGAGGTGGGCAGATCACCTGAGGTCAGGAGTTTCAGACCAGCCTGGCCCACATGGTGAAACCTCGTCTCTACTAAAAATACGAAAATTAGCCAGGCATGGTGGCATGCACCTGTAATGCCAGCTACTCAGGAGGCTGAGGCAGGAGAATCACTTGAACCAAGGAGGCGGAGGTTGCAGTGAGTGTGCCACCTCACTCCAGCCTGGGTGACAGTGAGACTCCATCTTAATAATAATAATAATAATAATAACAATAATAATAATAATAAAGAAGTTCATCAGATGGACAAGGCAGGAAGGGTGTTCCAGGACAAAAAAGCAGCTTGAGGGTGCAAGGGCCAGAGGCATGCCAGAGCACTGGGTGGTTGGAAGAATGAGGATTAGGAATTCACTCTGCCCAACCGGAACCCTGAGAAGGGATGGGTCTGAGACCTGGGTCTCAGGTCACAGCCATTCTCACTCCTCCAGACCCTGGGCCTCTGTGCCTCCCATTCCAAGGTGTTGGGTCCTCCCATTCCTGAGCCTCTGTGCTGCAGACTCAGGGCCTCTGGCTGAGGTGCCCCCTGTGAACCTGGGTCATTGCATCCCCGCTCTCAGATGTCAGATGTCTCTGTTCATTGGGTCCTCTATGCCCTGGGTCTGGTCTTGCTGTGCCCCCTAATCCTGGGTTGCTCTGTCCCCCAGATCCTGGGTCTGACCCTCTCCTGGCCCCACCCTACTCCAGCCTAACCATGCCTTCTGCAGGTCTCGGAGACCTTGGTACAACGCAACGGCGACTTCCTCATCCGGGACTCACTCACCAGCCTGGGCGACTATGTGCTCACGTGCCGCTGGCGCAACCAGGCCTTGCACTTCAAGATCAACAAGGTGGTGGTGAAGGCAGGCGAGAGCTACACACACATCCAGTACCTGTTTGAGCAGGAGAGCTTTGACCACGTGCCCGCCCTCGTGCGCTATCATGTGGGCAGCCGCAAGGCTGTGTCAGAGCAGAGTGGTGCCATCATCTACTGCCCGGTGAACCGCACCTTCCCACTGCGCTACCTCGAGGCCAGCTATGGCCTGGGACAGGGGAGTAGCAAGCCTGCTAGCCCCGTCAGCCCCTCAGGCCCCAAGGGCAGCCACATGAAGCGGCGCAGCGTCACCATGACCGATGGGCTCACTGCTGACAAGGTCACCCGCAGCGATGGCTGCCCCACCAGGTCAGCCAGGGCCCCATTTGTCAAATGGGGTTGTGGGTAATGAGAGGGCTAGTGAGAAAGAGAAGGCCTAGGTACACTGAAATGGGATGAAATTACTCTCCTGGAGCCTCTGTGTGCAGGGAGGAATGGGAGGAAGGTTGGGCCATACTCTGTGGATGTACAGAACACAGGGCTTGCAGGGAGTCAGACCCAGGTTGCAGTCCCAGCTCTGCCACTCGCTGGCCATGTGCCCTTGACCCTGTCACCTCTCCTCTGTTATCCCCATGTTCCTACCTATAAAGGCTTTCATTCAAGCAGCCCTCCCTACCCCAGGGGAGCCCTGAGTCCTGAACCGGAGAGGGGCCTGGTCCCCGCCACCTGATGCCACCCCTCCTCATCCTACCCAGCTAGGCCAAGGTGGGCATCTGAGCAGAGGGCTTTACAGCATGCAAATCACTGCACAGGGAATGGGATGTTCTCAGCAAATTTTAATCACACCTGGTTGTCTCCGGGGCTAAAATCAGGCCCCAGATGCTGGGAAAAGCCACAGCAGCTGACGGTTCCTGAGATCCTACTAAGTGTTAAGTGCTGTATGTGCCCAATCTCATCAACGCCCATTTCCTCCTGGGAGGTGGGTCCTGCCCATACACCCAATTTGTAGATGAGGACATAGGCTTAGAGGGGGGAAGCCGCTTGCTAGAGAGTGGTAGGATCAAGATTCAAACCCAGGTCCGTAGACTCTGAAGTCTGTGCCCCAAGTTTCTGTGGTTTCCCTGGCTGTTTGCAAAGAGATCTGCTGTCCTGTGCCACCTGCACTTGGATAGGCCCTTGAGGCTCTGTCTCCCTGGGGCTGGGTTGGGTGCTCCCAGTCAAGGAATTGATGAATGGATACCCTGTGGGCTGCAGCCACTTGGCCTGTGGTTGGGAACCAGTAAACATAATGGTGTCAGGATCCACGGACCATGTGTGCCTGAGGCATCCTGAGCATAGTTGGGAGCAGTGAGGAGAGGTTGGGATGGTGGGCCCACTCCTTAAGGCTCACTACTCTTCCTGCTAGCCCCTCTCCCCAGACCATTCTCCAGGTTGGAGGAAAGATTCTGCTTATCAAGCTGAGGGCACTAGTGAGGGGCCGTGTCTGCCCAGAGAATGGTTGTAGTTGACTAATTTGCACAAAGGCACCTCATGGGGTAGTTGAATTCTGGCCTATACCCCCTTTCCCATCCTCTCCTCCTTGGGAAAGGAGAGGGACAGAGGAGCTTGAGAAGTGTTGGCTCAGCTGGGTGCCCCCAAGCCTCATCCTCAGGCTGCTCTAAGCTTTGTGGGAGGGGAAGCTGGATAGGAAAGGAGGAGAGCAGGGTCATGTGGAAGATACCGACTAGGAACCGGGCTAATGGCCAAGCGTGGTGGCTCGTGCCTGTAATCCCAGCACTTTGCGAGGATGAGGTGGGTGAATCACCTGAGGTCAGAAGTTTGAGACAAGCCTGGCCAACATGGTGAAACCCCATCTCTACTAAAAATACAAAAAATTAGCCACGCTTGGTAACGGGCACCTGTAATCCCAGCTACTCGGAGGCTGAAGCAGGAGAATGTCTTGAACTCGGGAGGCAGGTTCAGCAGTTGCAGTGAGCTGAAATCACGCCACTGCACTGCAGTCTGGGCGACAGAGTGAGACTCCATCTCCGAAAAAAAAAACAAAAAAGAAAAGAAAAAAGACAAAAAAAGAAAAAAAGAAACCAGGCGTTCTAGCCACCAGGGTTCCTAGCTCTGCTCCTGACTCGCTGTGCCCCCTCCCTCATCTGGGCTTCAGTTTTTTTGGTACCTGTCAGTCGGGAGGTTGGATTTGATAATCTCCAAGCCTTCTCTGCCTCTGAAGTTCAAGGTGCAGAGGTGGGGGGTCCCAGAGGCAGGCTGAGGCCCCTGACCTCCGGGCTCCCTGCCCATGATGGTGTCTGCTCCACAGTACGTCGCTGCCCCGCCCTCGGGACTCCATCCGCAGCTGTGCCCTCAGCATGGACCAGATCCCAGACCTGCACTCACCCATGTCGCCCATCTCCGAGAGCCCTAGCTCCCCTGCCTACAGCACTGGTATGGCCAGCAGAGGGGGTGGAGCAGGTGGAGGGAATCTGTTGTTGAAGACTTCTGTCACCTATGTGTGGTTATGTGTGTTTCCGCCTCTTTTATGAGGCGCGACCTTTACCAAGAGAAAGAACTGACACTGGAATCCTGCTAACAGAACTGTTGATATCAACATATAAGATGTATCCATGGTTTGTTTATTTAGCAACTATTTATTTGTTTTTGTGACAGTTTTGCTCTTGTGGGCTGGAGTGCAGTGGTGGGATCTTGGCTCACTGCAACCTCCGCCTCCTGGGTTCAAGCGATTCTCTTGCTTCAGCCTCCCAAGTAGCTGGGATTACAGACCCCTGCCACCACGCCTGGCTAATTTTTGTATTTTTAGTAGAGACGGTGTTTCGTCATGTTGGCCAGAGTGGTCTCGAACTCCTGACCTCAGGTGATCCACCTGCCTTGGCCTCCCACAGTGCTGGGATTACAGGCGTGTGCCACCATGCCTAGCTAATTTTTGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGGTGGTCTCGAACTCCTGACCTCAGGTGATCCACCCGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACTGCACCTGGCCTCTATTTTTCTTAATAGACTTTATTTTTTAGAGCAGTTTTAGGTTTGCAGCAAAATTAAGTGGAAAGTACGGAACACTGTGCTTTCTTATAAATACGAAGAAAGTTTCTCTGTTAGAAACATTCCAATAGATCATTTCTGGAAAAAAAATAAAAAGAATGTTTTCAACAGGCCGTATTGTCCACGTGGCAGGCCAAGTGTCACGAGAGGGGGCTGACTCAGGAGGAACTTTCGCCTAGGGTGGCATTCCATTGAAGTGTTGCTGTCTGTATCGGTTGTCACAAATCCTTCCCTAAACACAGAGCCACCAACTTTGTCATAACTACAAACTTGATTTCAAAGCAATACCCTGAGTATAAAACCTAAAATTCCTTGCCAGAATGACTTATTGGACAGTTTCTAAGCAATCTGGTATAGTAAAGCAGCCCAGATGTCAAGACTTAAATCTCAGCTGTACCACTTGCTGGCTGGGTGACCTTGGGCAGGTTAGTGCACCTCTCTGAGCTTCACTTTTCTCATCTGTAGAATGAGGATTATAAAAGTACTTACTTCATAGGACATTGAAAGGATTAAATAGACTGAGGTACAAAGAAGGGTCTTGCAGGCACTAAGAGCTTAGTAAATATCGCCTTTGAGGTTTGATGATGGTTTTACTGTCATTATGTCTCCAGCATGTTGCCAGCTCCTAGCACACAAGGTTTAGCAACAAATCATTATTGCTAATTCAGGCCGGGCATGGTGGGGCACATCTGTAATCCCAGCTACTCAGGAGGCTGAGGCACAAGAATTGCTTGAACCTGGGAGGCGGGGGTTGCAGTGAGCTGAGATCATGCCATTGCACTCCAGCCTAGGCAACAGAGCGAGACTCTGACTCAAAAAAAAGTTAGCCAGGCGTTGTGGCACATGACTGTAATCCCAGCTACTCGGGAGGCTGAGGCTCAAGAATTGAAGAATTGCTTGAACCCAGGAGGTGGAGGTTGCAGTGAGCCTAGATGGCACCACTGCACTCCAGCCTGGGCCACAGAGCGAGACAGTGACTCAAAAAAAAAAAAAAAAAAAAAAAAAAGGAAATCATTATTGCTAATTCGTCGAGAAACAATCACATGTGGCACAAGAAACTCCAGCAGGTACTCAGCTTCCCCGGATCACTGAAGCTCCTCCAAGCAGTGGGTCCCCAAGGCTGCAGCAGCCTCAGGGTGGGGCCATGCAAACTCCTGGGTCCTGGTGATTTCAGAGCATCACCTGGGCTGGTCAGCTTGCCAGAGTCAATCGGCCCTGGTCTCTGGTGATGCAGGGAGGTGGGGACATCACCTCTGTACTCCCTACAAGGAGTGAGGGAGCCTGTTCTTTGGGAAGGGGTGCGGGAATCTCACTTTGGTGGGGAGCTGCTATAACGGGGCCTCTCTCTCTACCTTTCTGCAG
Seq C2 exon
TAACCCGTGTCCATGCCGCCCCTGCAGCCCCTTCTGCCACAGCATTGCCTGCCTCCCCTGTCGCCCGCCGTTCCAGTGAGCCCCAGCTGTGTCCCGGAAGTGCCCCAAAGACCCATGGGGAGTCAGACAAGGGCCCCCACACCAGCCCCTCCCACACCCTTGGCAAGGCCTCCCCGTCACCATCACTCAGCAGCTACAGTGACCCGGACTCTGGCCACTACTGCCAGCTCCAGCCTCCCGTGCGTGGCAGCCGAGAGTGGGCAGCGACTGAGACCTCCAGCCAGCAGGCCAGGAGCTATGGGGAGAGGCTAAAGGAACTGTCAGAAAATGGGGCCCCTGAAGGGGACTGGGGCAAGACCTTCACAGTCCCCATCGTGGAAGTCACTTCTTCCTTCAACCCGGCCACCTTCCAGTCACTACTGATCCCCAGGGATAACCGGCCACTGGAGGTGGGCCTTCTGCGCAAGGTCAAGGAGCTGCTGGCAGAAGTGGATGCCCGGACGCTGGCCCGGCATGTCACCAAGGTGGACTGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000095370:ENST00000471939:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.049 A=NA C2=0.649
Domain overlap (PFAM):
C1:
PF0001719=SH2=PU(9.9=18.6)
A:
NA
C2:
PF0061714=RasGEF=PU(11.3=9.5)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains