MmuINT0142976 @ mm10
Intron Retention
Gene
ENSMUSG00000059013 | Sh2d3c
Description
SH2 domain containing 3C [Source:MGI Symbol;Acc:MGI:1351631]
Coordinates
chr2:32747022-32749685:+
Coord C1 exon
chr2:32747022-32747146
Coord A exon
chr2:32747147-32749152
Coord C2 exon
chr2:32749153-32749685
Length
2006 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGC
5' ss Score
8.69
3' ss Seq
TCTCTTTCTCCTCTCTGTAGTAA
3' ss Score
9.09
Exon sequences
Seq C1 exon
CACCTCATTACCCCATCCTCGAGACTCCATCCGAAACTGTGCCCTCAGCATGGACCAGATCCCAGATCTCCACTCACCCCTGTCTCCTATCTCCGAGAGCCCCAGCTCTCCTGCCTATAGCACTG
Seq A exon
GTAAGCTAGCAGGGGGTAGTCTGTAATGCTGTTGTCGTTGGTGGGGGACATCGGTTACCTGACTGTTTCTGCCTCTGGGCTGGGAGCAGTGTCCCCACGAATGTTCTAGAAAAGCCTGTGGCAGAATCGCTGGTGTTGACACACAAGCAACATCCGGTGAATAGTGTTCCCATGGGTGCCAGGCAATGGGCACAGAATGGGTTCTCAGTGAGAGTGGCAGGGTAAAGTCTGCTGGGGGTGCAGCTTGTCACGGGGCCAGGCCTTGGGGCTGTGATGTGCACAGTGTTTGACTCCAGCAGACAAAGTTCCCACTACAGCTGCCTTACCAAGGGCGTTGGTAACAAGAGCATCATTCCTACCTAGGTCCTGCTTTGAGCTTAGACCAGGCTAGCTCAGGCTAGCTCAGGCTAGTGTGCTTTGCTGCTCTTTTTTTTTTTTTTTAAACTAACTTTTAGAGCAGTTTAAGATTTCTGAAAAACTTGAAATCATGGGATCCTGTGCTTATAAATACAAATAAAGTAAAAATATGTCCCCAGTTTATTTCTCAAAACAAAGCAAAACAAACCTCAGACTGTTAAGCAAAATGTCTTGCCCCGCAAGGCAGTCAGAGCATTGAGAGGGGTGGCTTCCTGGAAGTCTCGGCCTGGAGGGAGCACTCCATGCCTCTGGAGTGTTACTATGTGCCCCCAGAAGTCTTTCCTGTCGTCACATACACTTGCTTTCAAAACAGCATGGTCATGTGAAAACATTTATTTACTTATTTGTTTTATTATTTTAGACGGAGACTCAGTATGTAGCCTTGGCTGGCCTGGAGCTCACTATGTAGACCAGACTCAGAGCTCTGCCTGCCTCTATCTCCTAAGGACTGGAATTAAACATGCCTACCACCACACCCAGCTTATGGGTTTGTTTTTGTTTTTTTTTTTTTTGTTGTTGTTGGTTTTTTTTTTTGGTTTTTAATGGGACAATTTCCAGTAATCACCTAGGAGATAACGGCTTCTATCCTAGCCCTACCAGGTTGAGTGACCTCGGCAAGTCTCTAAGCCCTGAGCCTCCACTTTCTCAGCTCAAGACTGAGGACCATAAAAGTCCTTACTGCCATAGAATGGGACACTTGGGGTATTGTTTGTTTGTTTTTGAGACAAGGTCTCACTAAGTAGCTCTGGCTGCCTGGAACTTGTTATATAGATCAGGCTAGCTCAAATCTACAGAGACCTGGTCATCCCTGAGCGCTAGGGCTGCAGGTGTGCACCACCCCACTGGCTTTGCTGTTTTGCTTCTGAGTTCTTTTACATCCCTTTACTTATTTGTGTGTGGGGTATGGGGGGACACAAAGGCCAAGTGACAACTTCCCTGAGTTCACTTGGTGACAGCTTCACCAGGCATCATACTTCAGCAGAGCTTAGCTTCCCTGGACCGCCTATGTGGCTTCTGATGTTCTAGTCTCTTGGGGCAGCGGCTCCACTGATACAGGGAAGTGCTGAGGACCATAGAGTACCTCCCTCTACATTTTGGGATGTGGGACATTACTCTATACACAGGATGCAGACTATTCTTTGAGAGAACAGGGAAGGGAGGCCCCATTAAAAAAAAAAAAGATTTGTTTATTATGTATACAGTATCCTGTCTGCATGTCTGCCTTCAGGAGAGAAGAGGGCACCAGATCTCATTAGAGATGGTTGTGAGCCACGATGTGCTCGCTGGGAATCGAACTCAGGACCTCAGGAAGAACAGCCAGTGTTCTTCACTACTGATGTATCCCTCCAGCCTCGGAGGCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGACAGGGTTTCTCTGTGTAGCCTTGGCTGTCCTGGAACTCACTCTGTAGATCAGGCTGGCCTCGAACTCAGAGATCCGCCTGCCTCTGCCTCCCAAGTTCTGGGATTAAAGGCGTGGGACCACCACGCCCGGCGGGAGGTCCCATTTTTAAGGGTAGAGGAGATAACTAGTTTTCTCTTTCTCCTCTCTGTAG
Seq C2 exon
TAACCCGAGTCCATGCTCCTTCTGCCACCCCCTCTACTTCAGCACAGCCTGCCTCCCCAGTTGCCCGCCGCTCCAGCGAACCTCAGCTATGTCCTGGAAATACTCCAAAGCCTCCTGGGGAGTCAGACAGGGCCCCTCACGCAAGCCCATCCCACACCCTCTGCAAGGCCTCGCCATCACCATCACTCAGCAGCTACAGTGACCCGGACTCTGGTCACTACTGTCAGCTCCAGCCTCCGGTCCGTGGCAGCCGAGAGCAGGCCGCAGGAGAGACTCCCCGGAAGGCTAGGGGCTCCGGAGAGAGGCAAAAGGAACTGTTAGAAAATGGAGTCTCTGACGGGGAGTGGGGCAAGACCTTCACAGTCCCTGTAGTAGAAGCCACCTCCTCTTTCAACCTGGCTACCTTCCAGTCCCAGCTGATCCCCAAGGAGAACCGGCCTCTGGAGGTGGCCCTTCTGCGCAAGGTCAAGGAGCTGCTGTCTGAGGTGGATGCCCGGACACTGGCCCGGCATGTCACCAAGGTTGACTGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059013:ENSMUST00000074248:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.635
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0061714=RasGEF=PU(10.1=9.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types