HsaINT0151739 @ hg19
Intron Retention
Gene
ENSG00000125648 | SLC25A23
Description
solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 23 [Source:HGNC Symbol;Acc:19375]
Coordinates
chr19:6454334-6454728:-
Coord C1 exon
chr19:6454570-6454728
Coord A exon
chr19:6454487-6454569
Coord C2 exon
chr19:6454334-6454486
Length
83 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
GCTGTTGTCTCCCCATTCAGGTC
3' ss Score
10.79
Exon sequences
Seq C1 exon
GTCCTGGACATTGGCGAGTGCCTGACAGTGCCGGACGAGTTCTCAAAGCAAGAGAAGCTGACGGGCATGTGGTGGAAACAGCTGGTGGCCGGCGCAGTGGCAGGTGCCGTGTCACGGACAGGCACGGCCCCTCTGGACCGCCTCAAGGTCTTCATGCAG
Seq A exon
GTGAGGGGCTCTGGAGAGACCTGCCCCCTCCCCCAGGCCTGACACCTGGGAGGGGACCTCCAAGCTGTTGTCTCCCCATTCAG
Seq C2 exon
GTCCATGCCTCAAAGACCAACCGGCTGAACATCCTTGGGGGGCTTCGAAGCATGGTCCTTGAGGGAGGCATCCGCTCCCTGTGGCGCGGCAATGGTATTAATGTACTCAAGATTGCCCCCGAGTCAGCTATCAAGTTCATGGCCTATGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000125648-SLC25A23:NM_024103:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0015322=Mito_carr=PU(34.4=60.4)
A:
NA
C2:
PF0015322=Mito_carr=PU(63.0=94.4),PF126173=LdpA_C=PU(3.6=16.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGCAAGAGAAGCTGACGGG
R:
CTCCCTCAAGGACCATGCTTC
Band lengths:
182-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)