HsaINT0151877 @ hg19
Intron Retention
Gene
ENSG00000181240 | SLC25A41
Description
solute carrier family 25, member 41 [Source:HGNC Symbol;Acc:28533]
Coordinates
chr19:6426048-6427261:-
Coord C1 exon
chr19:6427114-6427261
Coord A exon
chr19:6426573-6427113
Coord C2 exon
chr19:6426048-6426572
Length
541 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGC
5' ss Score
7.09
3' ss Seq
TCTTGCCTGTGTCCCTGCAGATA
3' ss Score
13.39
Exon sequences
Seq C1 exon
ATGCTCCAGTGCTTCTGGGTGAAGTCAGGCAGGGATATGGGGGACCCCAGTGGCCTGGTCAGTCTGTCGTCTGTGACGCTATCCACGACCTGTGGCCAGATGGCCAGCTACCCACTGACTCTGGTGCGCACCAGGATGCAGGCCCAAG
Seq A exon
GTCAGCCTGTCCCCAGCGGCCACCACGCATGCCCCTTCCCCGCCCCACCCTGGCTGTCTCAATTTTCTCATACCCCAAAACTGAGTCCGGCACCCTCCGTGTCTGATCCCAGCCCACTTTTGATAACTTTTGAGACTGCGTCTCAAAAATATATATATAAAAATTAGCCAGGCATGGTAGTATGGACCTGTGGTCCCAGCTACTTGGGAGGCTGAGGCTGGAGGATCCCTTGAGTTCTGGAGGTCGAGGCTGCAGTGAGCTATGATCGTGCCTCCACACTCCAGCCTGCGCAACAGAGAGAGACCCTATCCCCACTCCCACCCCTCAAGAAAATTTCCTAAAATTAATCCTGATAACTACTACTCAGAAACTCCCCCACTCCTCCTCAAACTGACCAATTTCCTCTAAGACTCTTCAAACTGTTTTCCTACTGACCCCTGGGGCCCCTACCCGTGGCTTCAGCACCTGTCCGCAACATTCCAGACTCCTAGGAGGCCCGGTCATCTCTGGCCTAGTCCTGATCTTGCCTGTGTCCCTGCAG
Seq C2 exon
ATACCGTGGAGGGCTCAAATCCCACCATGCGCGGAGTCCTCCAGCGGATCCTGGCCCAGCAGGGCTGGCTAGGGCTGTACCGAGGCATGACCCCCACGCTACTGAAGGTCTTACCAGCAGGTGGCATCAGCTATGTGGTGTACGAAGCCATGAAGAAAACCCTGGGCATATAGGCTGTGAGCTGGACGACACAGCCTAGGCAGAAATGGGACAGGAGGACCTGATGACCCCTGGCCCCAAAGAGCCCTCGAGGCCTCAAGGTTCAGGCCCTGGGGCAGTTTTTGGTGGCAAAAGCAGGCTGGGGGTGGGGGTGGGGCTCTGGGTCAGAAGATTCCTGAAGCTGGGGTTGGTGGTGGGTGGAGGGGGGCAGTGCTGGGTCAGAAAACTCCTGGGACTCCCTCCCCAGGGTGCAGCCTGAGACAAGAAACGTGGACTCCAGTCTGGCCCCTTGTGGGTCGTCCTGGCTCCAGGGCGAAATGGTGAACATGTCACACAACAAGGAATAAAGAGATGGTTTTTGCTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000181240-SLC25A41:NM_173637:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=NA C2=0.035
Domain overlap (PFAM):
C1:
PF0015322=Mito_carr=PD(9.7=18.0),PF0015322=Mito_carr=PU(38.7=72.0)
A:
NA
C2:
PF0015322=Mito_carr=PD(60.2=96.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTACCCACTGACTCTGGTG
R:
GCCTGCTTTTGCCACCAAAAA
Band lengths:
342-883
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)