RnoINT0137048 @ rn6
Intron Retention
Gene
ENSRNOG00000048853 | Slc25a41
Description
solute carrier family 25, member 41 [Source:RGD Symbol;Acc:1588585]
Coordinates
chr9:10011472-10012611:+
Coord C1 exon
chr9:10011472-10011619
Coord A exon
chr9:10011620-10012123
Coord C2 exon
chr9:10012124-10012611
Length
504 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGC
5' ss Score
7.09
3' ss Seq
TTGTCTTTGTCTATCCCCAGACA
3' ss Score
10.32
Exon sequences
Seq C1 exon
CTACTCCGGTGCTTGTGGCAGAAGTCGGGCAGGGACATGAAGGACCCCAGTGGCCTCGTCAGCCTGTCGTCTGTAACACTGTCCACGACCTGTGGTCAGATGGCCAGTTACCCACTGACTTTGGTGCGCACAAGGATGCAGGCACAAG
Seq A exon
GTCAGCCTGGCTCCAGGAACCAATGCACATACCTGTTCCTTGCCTTATTCCAGCTCTCTGAATTTTCTCACCCTTCCCACCAACTTCCTCTATAACCCATCTGAAACACCTTTGCTAAGTACTGAACCCACCGAAGCTCATGCTGACCCCCAATCTAATCCTACCCCTCAAATTAACATAGCTTCAGCTACCTTGAGGCTGGGGCTCAAGGTACAAAGTGTGCCTAATATGCATGGGCTCAATCCCCAGTACCATGTAAACTGGGTGTAGGAGTGTTGTTATTCCAGCAGGAGGTAGAGGCAAGGGGATCAAGAGTTCAAAGCCAGCCTCAGCTACATATGGAGTTCTAAGCCAATCTGTACCACAAGATACCATCTCACAATACATACATATGTAACAATAACCGAATGATCTCTACTAAATTCTCTCCAAGTGTGACTCAGATCCTTTGCTGTGACATGTCAGGTCATACCCAGTGCTGAACTTGTCTTTGTCTATCCCCAG
Seq C2 exon
ACACTGTGGAGGGCTCCAACCCCACCATGCTGGGAGTCTTCAAGAGGATACTGAACCAGCAGGGCTGGCCTGGGCTATACAGAGGCATGACACCCACATTACTGAAGGTGTTGCCAGCAGGAGGCATCAGCTACCTGGTGTATGAGGCCATGAAGAAAACCCTGGGTGTACAAGTCCTGAGCAGATGATCTGCCCCGAACAAGAAGAGAATGGAAGACTCTGAGTTCCTGAGTCTCAAAAAGCACTCCAAGGCTCAGGCTTTAAAGCCATTTTGGTTTGCAAAAACCATCCAGGACTAGGGTTAGAAGAGTGCTGTGAGTCCCTCCAGCAGGGATATAGTCTGAGGTGGGATTCCAGCCTGGTTTTTGCAGGCTTCTCCAAGAGAAGACGCAGACATGGAATAAAGGTAGTTTTGGATGCCTGTGTCTGGGATTAGCTGGCTCTGGGTGCGGAGCTGGGAGAATAGGAGTGTATGGTATAGTTCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000048853:ENSRNOT00000074117:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0015322=Mito_carr=PD(9.7=18.0),PF0015322=Mito_carr=PU(38.3=72.0)
A:
NA
C2:
PF0015322=Mito_carr=PD(60.6=90.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTCAGCCTGTCGTCTGTAAC
R:
CCTGAGCCTTGGAGTGCTTTT
Band lengths:
350-854
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]