HsaINT0151877 @ hg38
Intron Retention
Gene
ENSG00000181240 | SLC25A41
Description
solute carrier family 25 member 41 [Source:HGNC Symbol;Acc:HGNC:28533]
Coordinates
chr19:6426302-6427250:-
Coord C1 exon
chr19:6427103-6427250
Coord A exon
chr19:6426562-6427102
Coord C2 exon
chr19:6426302-6426561
Length
541 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGC
5' ss Score
7.09
3' ss Seq
TCTTGCCTGTGTCCCTGCAGATA
3' ss Score
13.39
Exon sequences
Seq C1 exon
ATGCTCCAGTGCTTCTGGGTGAAGTCAGGCAGGGATATGGGGGACCCCAGTGGCCTGGTCAGTCTGTCGTCTGTGACGCTATCCACGACCTGTGGCCAGATGGCCAGCTACCCACTGACTCTGGTGCGCACCAGGATGCAGGCCCAAG
Seq A exon
GTCAGCCTGTCCCCAGCGGCCACCACGCATGCCCCTTCCCCGCCCCACCCTGGCTGTCTCAATTTTCTCATACCCCAAAACTGAGTCCGGCACCCTCCGTGTCTGATCCCAGCCCACTTTTGATAACTTTTGAGACTGCGTCTCAAAAATATATATATAAAAATTAGCCAGGCATGGTAGTATGGACCTGTGGTCCCAGCTACTTGGGAGGCTGAGGCTGGAGGATCCCTTGAGTTCTGGAGGTCGAGGCTGCAGTGAGCTATGATCGTGCCTCCACACTCCAGCCTGCGCAACAGAGAGAGACCCTATCCCCACTCCCACCCCTCAAGAAAATTTCCTAAAATTAATCCTGATAACTACTACTCAGAAACTCCCCCACTCCTCCTCAAACTGACCAATTTCCTCTAAGACTCTTCAAACTGTTTTCCTACTGACCCCTGGGGCCCCTACCCGTGGCTTCAGCACCTGTCCGCAACATTCCAGACTCCTAGGAGGCCCGGTCATCTCTGGCCTAGTCCTGATCTTGCCTGTGTCCCTGCAG
Seq C2 exon
ATACCGTGGAGGGCTCAAATCCCACCATGCGCGGAGTCCTCCAGCGGATCCTGGCCCAGCAGGGCTGGCTAGGGCTGTACCGAGGCATGACCCCCACGCTACTGAAGGTCTTACCAGCAGGTGGCATCAGCTATGTGGTGTACGAAGCCATGAAGAAAACCCTGGGCATATAGGCTGTGAGCTGGACGACACAGCCTAGGCAGAAATGGGACAGGAGGACCTGATGACCCCTGGCCCCAAAGAGCCCTCGAGGCCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000181240:ENST00000597558:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=NA C2=0.035
Domain overlap (PFAM):
C1:
PF0015322=Mito_carr=PD(9.7=18.0),PF0015322=Mito_carr=PU(38.7=72.0)
A:
NA
C2:
PF0015322=Mito_carr=PD(60.2=96.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTGAAGTCAGGCAGGGATA
R:
CCCATTTCTGCCTAGGCTGTG
Band lengths:
342-883
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains