HsaINT0152350 @ hg38
Intron Retention
Gene
ENSG00000160326 | SLC2A6
Description
solute carrier family 2 member 6 [Source:HGNC Symbol;Acc:HGNC:11011]
Coordinates
chr9:133471095-133473250:-
Coord C1 exon
chr9:133473105-133473250
Coord A exon
chr9:133472177-133473104
Coord C2 exon
chr9:133471095-133472176
Length
928 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
3' ss Seq
GCCCCGCTCTTCACCCGCAGAGC
3' ss Score
12
Exon sequences
Seq C1 exon
GCTACGCCGTGGGCTGGGGTCCCATCACCTGGCTGCTCATGTCTGAGGTCCTGCCCCTGCGTGCCCGTGGCGTGGCCTCAGGGCTCTGCGTGCTGGCCAGCTGGCTCACCGCCTTCGTCCTCACCAAGTCCTTCCTGCCAGTGGTG
Seq A exon
GTGAGTGTTCAGCCCCAGGCCCCAGGCCCCTAGGCCCTCTCTGACTGGCCAGGACCCTTCTCAGTGCCAGGGGCTGTGCCAAGGCCTGCTGTCAGGACCCTAACTCTCAGTGACCCTAGGAGATGAGCACACACCCCCTGAACTCAGAGACCCCAGAGTGGTCACGTGATAGCCTAGCAAACGCTCTTCATTATAAGAAACAGGAACGGGCGTAGGCAACTGTTCTGGGAAGTCAGGTTACCTCCTGGGCCAGGGCAGGACATGGCCCAGGACCCTGCCAGGGGCCCCGGAAGCCACCTCCCCACCGTGCCTCATCTCCCGCCCTCCTGGGCGCTGGGTCTCAGCAGCAGCCACACTCCCCCCTCAACCCCACCCACTCCCCCTGCCTCCTGGTTCAAAACTACGGGCCCTGTGACCAGCCAGAATCTGTGAGGCCCAGAGTAAGTTCCCATGAGGGAGAAGCTGGCTAGGGCAGCCTAGGCCAGCGCCTAAGCTGTCCCTGCAGTGGTCAGGGCAGGGGGGTTGGGGGAGGGCAGGCAACCCAGAGTGAGTCCATCAGCCTAGAGGGTCCAAGAAGAACCTGCGTGCCCACCAGGCTGCAGGGCGGGCCTCCTGCAGGCCGCGGCATGGAACAGCTGGGATGCCAGCGCTGGGTAGGGGGTGTGGAGGGGGTACCTGAGCTGACGCCAGAGGGCCCAGCCCCTGAGGAAGGCCGAGGGGCAGACGGGATGCAGACTTCAAGGGCTACTTCGGATTTGTCCTGGGGACAGTGGGGGAGCCCTGGTGTGGGGGGGCGGTCTCTGAACACAGGAAGGACCAGATGAAGGCCCCACAGGGCTGGTCACTACCAGCAGCGCCCACGAGCTCCTCTGGGGCAGGAGGACCCTGGAGCTTCTCCCTGTGACCCGGCCCCGCTCTTCACCCGCAG
Seq C2 exon
AGCACCTTCGGCCTCCAGGTGCCTTTCTTCTTCTTCGCGGCCATCTGCTTGGTGAGCCTGGTGTTCACAGGCTGCTGTGTGCCCGAGACCAAGGGACGGTCCCTGGAGCAGATCGAGTCCTTCTTCCGCACGGGGAGAAGGTCCTTCTTGCGCTAGGTCAAGGTCCCCGCCTGGAGGGGGCCAAACCCCCAGTGGCTGGGCCTCTGTGTTGGCTACAAACCTGCACCCTGGGACCAAGAGGCAGCAGTCATCCCTGCCACCAGCCAGAGCACAGGAAGAGCAGTGTGATGGGGCCTCAGCAGCGGGTGCCCCTGGCTCGGGACAGGTAGCACTGCTGTCCAGCCACAGCCCCAGCCCAGGCAGCCCACAGTGCTGCACGTAGCCATGGGCCGCAGGAGTGCATACAACCCTGCATCCAGGGACACGGCCCTGCTGGGTGACCTCAGGCCTAGTCCCTTTCCCTTGCGTGAAGGACACGCCCCACAGAAGGCTACGGGGAGGACTGAGAGGACAGGGCTGGAGGCAGCCAAGTAACGTAGTCATATCATCGCGCTCTGATCTGGTGGCATCTGGCTGTGCAAGGAAGACCCGGCTTTGCCCTCACAAGTCTTATGGGCACCACAGGGAACATCCTGGACTTAAAAAGCCAGGGCAGGCCGGGCACAGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAAGCAGGTGGATTACCCAAGGCCAGGAGTTCAAGACCAGCCTGGCCAACATGGTGAAACCCCGTCTCTACTAAAAAATACAAAAAAGCTGGGTGTGGTGGCACACACCCGTAGTTCCAGCTACTTGGGAGGCTGAGGCAGCATTGCTTGAACCCGGGAGGTGGAGGCTGCAATGAGCTGAGATCATGCCATTGCACTCCAGCCTGGGCAACGAGAGTGAAACTCCGTCCCCACCCCCTGCCAAAAAAAAAAAAAAAAAAGCCAGGGCAAAGGACCTGGCGTGGCCACTTCCTCCTGCCCCAGCCCAACCTCTGGGAACAGGCAGCTCCTATCTGCAAACTGTGTTCACCCTTTTGTAAAAATAAAGGAACTGGACCTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160326:ENST00000371899:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008319=Sugar_tr=FE(10.5=100)
A:
NA
C2:
PF0008319=Sugar_tr=PD(8.9=78.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCACCTGGCTGCTCATGTC
R:
TTTGTAGCCAACACAGAGGCC
Band lengths:
343-1271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains