GgaINT0126016 @ galGal3
Intron Retention
Gene
ENSGALG00000002982 | F1NAR8_CHICK
Description
NA
Coordinates
chr17:7606564-7606909:-
Coord C1 exon
chr17:7606764-7606909
Coord A exon
chr17:7606679-7606763
Coord C2 exon
chr17:7606564-7606678
Length
85 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
3' ss Seq
CTTCCCATCCCTCTTTCCAGGAG
3' ss Score
10.79
Exon sequences
Seq C1 exon
GCTATGCCATGGGCTGGGGGCCCATCACCTGGCTGCTGATGTCGGAGATCCTCCCTCTGAAAGCCCGTGGGGTGGCATCGGGTCTCTGTGTCGTCGTGAGCTGGCTGACAGCCTTTGCCCTGACCCAGCTCTTCCTTGGGGTTGTG
Seq A exon
GTGAGTACAGCCCTAGAGGCATCCAGGATCTCTTCCTTGGAGTCCCCCACACCATCTCACGTCTGCTTCCCATCCCTCTTTCCAG
Seq C2 exon
GAGTTCTTTGGCCTCGAGGTGCCATTCCTATTCTTTGCTGTCATCTGCGCTGGGAATGTCTTATTTACAGCCTGTTGCGTTCCAGAAACCAAACGGAGGTCCCTGGAACAGATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002982:ENSGALT00000004719:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0008319=Sugar_tr=PD(11.4=95.9)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCACCTGGCTGCTGATGTC
R:
AGCGCAGATGACAGCAAAGAA
Band lengths:
175-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]