GgaINT0126016 @ galGal4
Intron Retention
Gene
ENSGALG00000002982 | SLC2A6
Description
solute carrier family 2 (facilitated glucose transporter), member 6 [Source:HGNC Symbol;Acc:HGNC:11011]
Coordinates
chr17:6936944-6937342:-
Coord C1 exon
chr17:6937197-6937342
Coord A exon
chr17:6937112-6937196
Coord C2 exon
chr17:6936944-6937111
Length
85 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
3' ss Seq
CTTCCCATCCCTCTTTCCAGGAG
3' ss Score
10.79
Exon sequences
Seq C1 exon
GCTATGCCATGGGCTGGGGGCCCATCACCTGGCTGCTGATGTCGGAGATCCTCCCTCTGAAAGCCCGTGGGGTGGCATCGGGTCTCTGTGTCGTCGTGAGCTGGCTGACAGCCTTTGCCCTGACCCAGCTCTTCCTTGGGGTTGTG
Seq A exon
GTGAGTACAGCCCTAGAGGCATCCAGGATCTCTTCCTTGGAGTCCCCCACACCATCTCACGTCTGCTTCCCATCCCTCTTTCCAG
Seq C2 exon
GAGTTCTTTGGCCTCGAGGTGCCATTCCTATTCTTTGCTGTCATCTGCGCTGGGAATGTCTTATTTACAGCCTGTTGCGTTCCAGAAACCAAACGGAGGTCCCTGGAACAGATTGAGGCCTTTTTCAGGACCGGTCGGAAGTCATTCCTGAGGTCGTTCAGGAGGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002982:ENSGALT00000004719:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008319=Sugar_tr=FE(10.5=100)
A:
NA
C2:
PF0008319=Sugar_tr=PD(9.0=73.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCACCTGGCTGCTGATGTC
R:
AGCGCAGATGACAGCAAAGAA
Band lengths:
175-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]